Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name SMARCE1
Plot displaying the genomic locations of a parental gene (in chr17) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Also known as BAF57|CSS5
Coordinate chr17:40624962-40647818
Strand -
Gene summary The protein encoded by this gene is part of the large ATP-dependent chromatin remodeling complex SWI/SNF, which is required for transcriptional activation of genes normally repressed by chromatin. The encoded protein, either alone or when in the SWI/SNF complex, can bind to 4-way junction DNA, which is thought to mimic the topology of DNA as it enters or exits the nucleosome. The protein contains a DNA-binding HMG domain, but disruption of this domain does not abolish the DNA-binding or nucleosome-displacement activities of the SWI/SNF complex. Unlike most of the SWI/SNF complex proteins, this protein has no yeast counterpart. [provided by RefSeq, Jul 2008]

Retrocopy(s) from SMARCE1

Retroname Coord Strand Genomic Region ENSG
SMARCE1P1 chr11:107403337-107404582 - Intragenic
 ENSG00000225215 UCSC
SMARCE1P5 chr13:44594767-44596146 + Intergenic
 ENSG00000230793 UCSC
SMARCE1P3 chr14:21162421-21163796 + Intergenic
 ENSG00000259102 UCSC
SMARCE1P6 chr2:26149113-26150768 + Intergenic
 ENSG00000214465 UCSC
SMARCE1P2 chr6:84429513-84430885 - Intergenic
 ENSG00000226309 UCSC
SMARCE1P4 chr8:37095150-37096432 + Intergenic
 ENSG00000253650 UCSC

Expression

Transcript Sequences

>NM_003079.5
CAAAGGGAAGCGAAGCCGGAGCTGCGGGCGCTTTTTCTGCCCGCGGTGTCTCAGATTCATTCTTAAGGAACTGAGAACTTAATCTTCCAAAATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGGATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCATCCTCTGGTATCACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATCATAATTCCCCCGCGTACCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGACAATCTCGCATGGAGAAAGGAGAACCGTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGATGGCTTTTCAATGAAGCATACAGCCACCGCCCGTTTCCAGAGAAACCACCGCCTCATCAGTGAAATTCTTAGTGAGAGTGTGGTGCCAGACGTTCGGTCAGTTGTCACAACAGCTAGAATGCAGGTCCTCAAACGGCAGGTCCAGTCCTTAATGGTTCATCAGCGAAAACTAGAAGCTGAACTTCTTCAAATAGAGGAACGACACCAGGAGAAGAAGAGGAAATTCCTGGAAAGCACAGATTCATTTAACAATGAACTTAAAAGGTTGTGCGGTCTGAAAGTAGAAGTGGATATGGAGAAAATTGCAGCTGAGATTGCACAGGCAGAGGAACAGGCCCGCAAAAGGCAGGAGGAAAGGGAGAAGGAGGCCGCAGAGCAAGCTGAGCGCAGTCAGAGCAGCATCGTTCCTGAGGAAGAACAAGCAGCTAACAAAGGCGAGGAGAAGAAAGACGACGAGAACATTCCGATGGAGACAGAGGAGACACACCTTGAAGAAACAACAGAGAGCCAACAGAATGGTGAAGAAGGCACGTCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGGTCGACAGTATGGCAGAGGAAGGAACCAGTGATAGTAACACTGGCTCGGAGAGCAACAGTGCAACAGTGGAGGAGCCACCAACAGATCCCATACCAGAAGATGAGAAAAAAGAATAAGTGTTGCCTTGTTTTGTGTGTTCTAAATACTTTTTTTAATGAAAAAATGTTTTTTGGTTTTAATGGTGTTACGTGGTTTGTGTATTAATTTTTTTTCTTGTCCATATCACACCACCAAAGGCTTTTGGACCATTTAGCATCATGAGCCTAATGGCTCAGTCAGTCACCTTTCTTAAGTGTTGTGAAGATGGCTCTTTTCTTTGGATCTTGTTTCTAGCCCTCAACTGCTGAAAGCCTCAGAATTTAGATTAATTGAGAAAACACCCACCTCTTTTAGAGAATTATCCTTTGATGCTGCAGAATCTACTCTTACAATGCCTTCCTACAGCTCACTGGGGTGCTTACCAAAGCCATAGCTTTAAACCTTCCCAGTCCCCATCAGTAGCTTCCTGAAAGTCTCCTCTCTTGTTTACTTCTGCAAAGGGTAGCTTCTTAAAAACGTGATCATGTATGAGTATGTATTTGTTCACTTACCCTTTTTTACTTTTAATCAATGTCAGATACCAAGAGTTGTGTTAAGCTGAGTGTAGTGTGTAACTAACTACACTTGGATCTTACTGATCCAGAAATAGTCCCCATAGTTAGAGTAGTTACTTATGAAGTGGTTATTAAAGTGAACACAGCACATATACATTATCTATACTGCTTTTTGTTATGATTAATACTGGGTATGTTCTGGTAAATCCATCCTTATTGTATAGAAAAAAAATTACTTTTTTACCAGGTTTTCCAAAGACAGAATAGATCACAAAGCTCAAGGAATTTAATATTCTTGTAATGGACTAGATAATTCAAACTGATTAGCCCATTCCAGAAGAAAAACAGCTGGGAATTAAGTTAATCCACTTGAAATTGTTTTACAATAATCAGAACATCCAAACCTCAAGGCTCAGGATCCCATAGACCAGAGCCCACCTTTTTGATAAACTTAGTAAAGTCTTGGAGACTAGAAGCAAGATAGTTTGTGACACATAAGCTTCCCAAAAACTAGAATAGATTTTTACTGAATAGTGGTATATCTGATGGTATATGTTTCTTAAAGGTCCAAATGTAATAAAAAAAAAAATGAAAAAAAGGTCTCAGTGTTTTTAATGCACTACATATTTGTATGCAAGACAAGCATCCAGTTTTTTTCTGTAATGCAGTGACAGTGTGGAATGACCACTCAGCCATTATAAATTTGTGTACTCAGGGCCCTTGTCTCACCCAACTATCTCTATAAACTGCTGCAGTAGCTTATTTGTACAAGACACTTGTGAAAATCAGTTTTCTTACATTATAGTCATTGTCACATATGGAAGTTGGTCTTTGATTCCAAAAGTAAAGGGAATATGTTTCTACATTAACAGGAATATGGAGAAATCTGTAACGTTTGAATTATCTTTGAAAGAATGGCTAAATGATAAATGTTAAGTCCTGTGCCTATATGGAGAGGACTCTGTACCAGCATGAGTTAATTTAAGTGGATTCACTGCTATTCAGTTCATAGCACATTAGTGACTAGGAATGTGTGTTCAGCCTCCTGAGAGAGGAGGGGAGGAAGCTTGATACTGGGTGGAAACAACTCTTGACATCTGTTTCCTTGTGTGTCAAAGAACGAATTTGTATCAAATAGATCTGTTTTGAGCTTTGGCCATTATTTGGCTAAGAACTTCAGCCATCTCATCTCAGACAAATTGGACAGCCTCTTTGATACATTTTCTAGTAGTCAAAATGGGGCAGATGTAGTTTAATATGGGTGGAAAACTGCCCCAGCAAGATACCAGGTTATTTACTGTGGTATCGAAAGCTCTAAGAGAATGGAAGTGGTTCTTTTGCCCGGCTGGAAATAGCAGTGGGAAGACAAGTCTATCCAGACCAAGCCTGTCCATACAACACTGGCAATCAGTTGATGAGGGAATTAAGTCAGATGGgagacgtctcaatctgtcgcccaggttggagtgcagtggtggcgatctcagctcactgcaacctccacctcccaggttcaagcaattctctctgcctcagcctctagagcagctgggattacaggctctcgccaccatgcccggttaatttttgtattttttagtagagatggggtttcaccatgttagccaggctgatcttgaactcgtgacctcaggtgatccgcctgcctcagtctcccaaagtgctgggattacaggcgtgagccactgtgcccggccTCAGTTGGGATTTGACAGCTCTGAACCTCAGCAGGGGAAGATTGATGTAAAAATCCACTTGGTCAGAGTGATATATGTAGACTTGATGTTTGAGATGGTTCTCAGTTTAGAGAATGTGGGATATGGTAGAGGTCTTTGTTTTTTTCCCATGTCCCAAAAGGTGCTGGGCAAGTAGCTTGAACTCGAGCCTGTTTTAATTATAAAATAGATCAAACTGCTCTTTCTTGGTGCCCTTACTGCTCCTTGATTTTTAGTGCATTTATTTTGAGTATGAATGCATAAAGTCTGAGGGCCTAAATTTTGTTAATTTTTTTTAACAAATGGGAGAGGGGAATCCTCGATAGTCACCCAAttttcctttttttttgagacagtctgactgttgcccaggctggagtgtaatggcgccatctcggctcactgcaacatccagctcctgggtttcagcaattctcctgcctcagcctcctgagtagctgggattacaggcgcccgccaccacgcccggctaatttttgtatttttagtagagacaggattttgccatgtttgccagcctggtctcgaactcttgacctcctgatccaccctcctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccCCATAGTCCCCCAATTTTCTAACAGTTTTAAATTCTGTAACTTCTCCTGTCTGTAAACAAGGCTGTCTTTTCAAATGGCTCTCCTACAGGATGTGATAATTATCTATTCTATAAAGCCGAGGTTTGGAGAGGTAAATAGCTATTTCACATTAACACAATAATGTCAATGCCCTATGGAAAAGATAAAATACTTGGACTATATTTTAAAGGGGAATCTGGGGTCATGCATATTGAAGTTTAACTAGATCCCTCCAGATTTTTGGTTTTGATCCTACACATTTAGATACTAGTTTTGGATTTTAGACAGTTGGTGCTGACAGTGTGAAACTCCTATTGCCTGCAGTTAAATTGAAGCTTTGGTTTCTCGTGAACAGGCAGTGAAGCTGGTATTATACTTTAAGTCCTCATTTCAGAAATAGTTTCCCTCCACCCCCAAGCACTACCACACATGGTCTCCCCACCTGGTTTCAGCTAGTGCATTAGTTTTATCTTGTTTTTTACCGCTGGGCAAACCTTGCTGGAACAACAACTGACTTCATGATTTGCACATTTGGAGGGCTTAACGTCTTTGCAAATGAAAAATCCACTGTACAATAACAAGCTCAAAGGAACTCGGAGCCTTTTTAGAAGAAATCGTGCTGAATTATAATGTGGCTTACTGCAATAATGTTTCTTTGATCAGGATGGAAAGGAAAATACTGAGTTTAGCAGAAAACGATGTCTAAATGTATTTGTAATGATACAATTGTTTATAAATGTTTTACTATTAGGTTGAACCATAAGAAATTGCCAGTGTACAATTTCATCTACAAAATGACTGGCTTAACCTAAATTCTGCATTTTATACTCCAAGAATAAGCTCTTCGTGGCAGCTTTCTAAGTGTGAAATGATGGAACTTTCTATTTGCCAGAATGACCTACACTTCTCTAATAGTTTATCTCATATTGTTAGCCAAACGCTGATTAAAATGCAAATTTCAAACTA