Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name SNRPD1
Plot displaying the genomic locations of a parental gene (in chr18) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name small nuclear ribonucleoprotein D1 polypeptide
Also known as HsT2456|SMD1|SNRPD|Sm-D1
Coordinate chr18:21612314-21633520
Strand +
Gene summary This gene encodes a small nuclear ribonucleoprotein that belongs to the SNRNP core protein family. The protein may act as a charged protein scaffold to promote SNRNP assembly or strengthen SNRNP-SNRNP interactions through nonspecific electrostatic contacts with RNA. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2014]

Retrocopy(s) from SNRPD1

Retroname Coord Strand Genomic Region ENSG
SNRPD1P2 chr12:87820545-87820918 - Intergenic
ENSG00000258179 UCSC
SNRPD1P3 chr12:96386749-96387239 - Intragenic
ENSG00000257169 UCSC
SNRPD1P1 chr1:44122053-44122595 - Intragenic
ENSG00000233514 UCSC

Expression

Transcript Sequences

>NM_006938.4
CTTGACGTCCGGAGCCCCTGGAGTAGGCGCTTCCGGCCATTCATACTGCAGTCGGTCAGTGTTCGGTTGAAGGATTCTGTGTGCTGTCGGACCCAGAGGGTGACGGCGCCGCTAGGATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGGAACAATCACAGGTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTACAGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCAGACAGTTTACCTCTGGATACACTACTTGTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGGGAAGCTGTTGCaggaagaggcagaggaagaggaagaggaagaggaCGTGGCCGTGGCAGAGGAAGAGGGGGTCCTAGGCGATAATGTCTCTCAAGATTTCAAAGTCATATGAGATTTGGGATATTTTTTGTACAGGTTGTGTTTGTTTATGTCAGTTTTTAATAAACATAAATGTGGGACAGAGCTGTCTATTTAGTATATCAAAGTTTTAGTAGTTTCCTCCACATTCACGAAATTACCACAGTGAGAGCTAAGCATTTCTACTGGGCAGTTTCATTTTTAGTTGATCAGGTTTTAAGTTTTTGAACTAAAATTTTTCTTTTTCTTTTTATGATGAATAAGgttaaaataaaagccttagacaaattaaatttggcagagtttaattgagcaaaggacaattcacaaatcaggtagcccctgaaccataataggctcagaggcttcagcccagctgcatagttgaagatttatggacagaaggaaagtgatgtatggaaaatggaagtgagatacagcaacagccggattagttacagttcagcgtttgccttatttgaatatggtttgaacagttcgctgtctttggttggctgaaacttagtgattgccacaagagtagggtaccgtctgtttacacgtccagttaggctacagttctatgtactgagaaacctttaagctgaacttgagatatgtaaagagactttaggctaaacttaaCAATATATATAGGATATATACCCTTCTACTTCACATGCACTGAATATGCATTTTATTGCTTTACTCTTCATTCTGTGGCACCTACCCACAGGGGAAGTAAGAAGTTTGTTTTGGTATTTCGGAAACTAAAGTCCTTATGGGATGGGGTCTAGAATTGATTCTCCTTTCCTGAGTTTTACTCCACGGAGTCTTAGGTACCTGGTAAAAAGTTGTCTTCTAAATTAAGGGTCATTGCTTTGTTGTCTAGCTGCTAATGTCTTACTTTTGTTTCTTTTGCTTTTTAATCAGTTCTTAATAGGATATAGTTTTATGTTTTCCAAGTTATAACTTGGAGTTAATGGTCACTAGATTATCAGTTATGAGCAGTGTTAAAATCTCCTATTAATGTGTAATGTACCTGTCAGTGCCTCCTTTATTAAGGGGTTCTTTGAGAATAAAAGAGAAAAGACCTACTTTATTTGACAGCAAAACTGTTCTAATTGTTAATAAGGACTTTTAAAAATTGTTTTTGATTTGCTAAGCTCAGAAAAAATGTCTCTCAGTGCATCAGTTCTTTGTAAAGCTTACTACGAAGTATTTATATGCTAAGGAAAACAACTGAGGATGTGGGTGGCTTAAATCTGTATTTTCATCATGTATGTGAGTTTTTTTTTTTTTAAGTAAAGAAATTTTCTGCAAAGATCGTTACCTTAAAAAAGTTTAGCctgggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagttgaagaccagcttggccaagagggtgaaaccccatttctactaaaaatacaaaagttagccaggtgcagtgacaggcgcctgtaatcccagctactcatgaggccgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccactgcactccagcctgggcgatggagtgagactacgtctcaaaaaaaaaTCGAGAGAGAGatatatatatgtatttatatatatatgtatttatactaatatataaatatatactaatagatatattagtatacatgtagaatgtacctgtcatatatattagatatataaatgtatatattggtataaataaatactagatatatatTTTTTTAAGTATCTTACCTCATCAAGTAAATTCAAATGCTTTTTGATTTTTCCACAGTTGATAATTTTTTTTTGTAAGTCATTGAAGTTATATAGTAATTAGCGTTTTTTCCCCCACAAATTATTGGCAGTGGTCACCCAGTTGTATTACAGGTTCTATGATCCAAAAAGGGATGTATGAAATTCATGATGATTAAGACAAttttttctttctttcttttgagacagagtcttgctgtgtcacccaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcgtcccgggttcaagagattattgtgcctcagcctccagagtagctgggattataagcgtgcgccaccacacccagctaatttttttgtatttttagtagagacggggtttcaccatgttggccagactTAAGACAATTCTTTAATAGTAAATATATTAAAGGTGAGTTGGCTTGACAAGATACAACCAATATGTAATTTTTCTCCACACGttttttttttttttttttttttttttCTGgagacagtcttgctctgttgcccaggctggagtacagtggcgcgatcttggctcactgcaagctctgcctcccgggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgccaccacacccagctaattttttgtctttttagtagagacggggtttcactgtgttaggatggtctcgttctcctgacctcatgatctgcacgaggcctcccaatgtgctgggattacaggcgtgagccaccgtgcgtccccggccTATACCTTTCATTAATTAATAagctgggggaataaataactggatttcattcttttccatcttctgacctgttggtgctcctattgcttgtatccaagtagaaggcaaaaggcaagagacccctgtaatgcagCAAGTGGAGAGATTTGTTGAAGGGGTCAAACAAAACCCTGCAAGAGTAGGAAATAAACAGTTGGCTCCTGTCCTCGTGGAGCTTATAGACAGAAGCAGataacaaataaaaattggagcttagtgccgtggtgcacacttgtagtccctgctactggggaggctaaggcaagaggatcgctatagcctgggaatttgaagctgtagcgtgctatgattgcaagcagcctgggtaacctagtgagacctggctcttaaaTTTAAAATTTAAATGAAAATGGCCACTTAGCATAAGAGATCTAAAATTACGTTTTGTcctggcatggtggctcatgcctgtgacctcagcactttgggaggccgagatgggcgaatcacttgaggtcaggagttcgagaccagcctgggtaacatggtgaaaccctgtctactgaaaatacaaaaattagcttggtgtggtggcgggtgcctgtaatctcagttactcaggaggcttaggcaggagaatcacttgaaccctggaggcagaggttgcagtgagctgagatcacaccactgcacttcagcctgagtgacagagcgagactgtttcaaaaaaaaaaaaaaaaTTTGTTTTGAGAGTTTTTGTGTCTAGGATGTTTGCAGTGTGAAGCCAGTCTAGTAACAGTTTAAATGTAATAATAAATCACAGTGGGTACTAGATTGAGTTTATTCCACTAGAGGTCATTATTTCATTTCCATGTGAAAGGGCTAAAATTGGGTGAAGAAAAAGCTATTTGAACTGATTACCATCATTTGCTATAAAGGAAGCATTATAGTATGAATAGAAAACAGACTAGAGTTTAACATGCTTCTCTTGACCCCTCTTCACCACCCCCTAAAAGGCAGATGGGATCTTAGGACTGCAGCATTTTGTACACATCTGATATTTAATGAGATGTTACATATGAACTTTAGttttttttcttttcttttcttttcttttcttttctttttttttttttgagacagagtctagctctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaaactctgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgagactacaggtgcccaccactatgcccggctaatgttttgtacttttagtagagacggggtttcactgtgttagccaggatggtctgaatctcctgacctcgtgattcgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgtccggccGAACATTAGTTTTTAAAGAAATGTATTATGAATATAGATAGAAAACCCAAAGTGAAGGAATAGAAAATGAAATATCAGTTTCTTTTAATCTATCATAATTATGTGAGCATAACTTAGTATTTTGAAATAGATTAATGTAGTCAGCAAACAATTCATGTATTACCTATAATAGATATCATACATATAACATTTAATAACATACAGTTCTTGTTCCTGAAGACTTAACCTAGAAAATAACTCCATAACAAGAAGAATCTCTGTCATAATAAACCAACAGCAGACATTTTCTAAAGGCATTAAAAGTATATCTGATACTGGCCTTTATTAATGTGAAATTCTTGTGGATCTGTGAAATAAAGAGGAGTACTTTC