Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SNRPD1P3
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:96386749-96387239  UCSC
Coordinates (T2T) chr12:96360950-96361440  UCSC
Coordinates (hg19) chr12:96780527-96781017  UCSC
Strand -
Parental Sequence NM_006938.4
Parental seq. overlap 333 bp
Parental seq. overlap (%) 6.8%
Genomic Region Intragenic (CDK17)
Retrocopy Summary SNRPD1P3, located on chr12:96386749-96387239, is a retrocopy of the parental gene SNRPD1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SNRPD1
Full Name small nuclear ribonucleoprotein D1 polypeptide
Also known as HsT2456|SMD1|SNRPD|Sm-D1
Coordinate chr18:21612314-21633520
Strand +
Gene summary This gene encodes a small nuclear ribonucleoprotein that belongs to the SNRNP core protein family. The protein may act as a charged protein scaffold to promote SNRNP assembly or strengthen SNRNP-SNRNP interactions through nonspecific electrostatic contacts with RNA. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2014]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SNRPD1P3
Bonobo Pan paniscus SNRPD1P3
Gorilla Gorilla gorilla SNRPD1P3
Orangutan Pongo abelii SNRPD1P4
Gibbon Nomascus leucogenys SNRPD1P2
Crab-eating macaque Macaca fascicularis SNRPD1P1
Rhesus Macaca mulatta SNRPD1P2
Baboon Papio anubis SNRPD1P2
Golden snub-nosed monkey Rhinopithecus roxellana SNRPD1P1
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SNRPD1P3
GGTCCTGGTGGTAATGTCTCTTAAGATTACTGTTTCAAGGTAATATGTGATTTGAGATATTTTCTGTATAGGTTTTCTTCGCTTATGTCAATTTTTATGGATGCTGTGTGCTATTGGACCCAAGGAATGACGGCACTGCTAGGATGAAGCTCATGAGATTTTTGATGAAATGGTTCATGAAACTGTAACCTTGAATTGAAAAGTGGAACACAGGTCTATGGAACAGTCACAGGTGTGGATGTCACCGTGATACACATCTTAAAGCGTGAAAATGACCCTGAAGACAGAGAACCTGTACAGTTGGAAACACAAATTTGAGGAAGTAACATTAGATATTTTACTCTACCAGACAGTTTACCTCTGGATACACTACTTGTGGATGTTGAGCCTAAAGTAAAAACCTAAGAAAAGGGAAGCTGTTTGTTGCa
>NM_006938.4
CTTGACGTCCGGAGCCCCTGGAGTAGGCGCTTCCGGCCATTCATACTGCAGTCGGTCAGTGTTCGGTTGAAGGATTCTGTGTGCTGTCGGACCCAGAGGGTGACGGCGCCGCTAGGATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGGAACAATCACAGGTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTACAGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCAGACAGTTTACCTCTGGATACACTACTTGTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGGGAAGCTGTTGCaggaagaggcagaggaagaggaagaggaagaggaCGTGGCCGTGGCAGAGGAAGAGGGGGTCCTAGGCGATAATGTCTCTCAAGATTTCAAAGTCATATGAGATTTGGGATATTTTTTGTACAGGTTGTGTTTGTTTATGTCAGTTTTTAATAAACATAAATGTGGGACAGAGCTGTCTATTTAGTATATCAAAGTTTTAGTAGTTTCCTCCACATTCACGAAATTACCACAGTGAGAGCTAAGCATTTCTACTGGGCAGTTTCATTTTTAGTTGATCAGGTTTTAAGTTTTTGAACTAAAATTTTTCTTTTTCTTTTTATGATGAATAAGgttaaaataaaagccttagacaaattaaatttggcagagtttaattgagcaaaggacaattcacaaatcaggtagcccctgaaccataataggctcagaggcttcagcccagctgcatagttgaagatttatggacagaaggaaagtgatgtatggaaaatggaagtgagatacagcaacagccggattagttacagttcagcgtttgccttatttgaatatggtttgaacagttcgctgtctttggttggctgaaacttagtgattgccacaagagtagggtaccgtctgtttacacgtccagttaggctacagttctatgtactgagaaacctttaagctgaacttgagatatgtaaagagactttaggctaaacttaaCAATATATATAGGATATATACCCTTCTACTTCACATGCACTGAATATGCATTTTATTGCTTTACTCTTCATTCTGTGGCACCTACCCACAGGGGAAGTAAGAAGTTTGTTTTGGTATTTCGGAAACTAAAGTCCTTATGGGATGGGGTCTAGAATTGATTCTCCTTTCCTGAGTTTTACTCCACGGAGTCTTAGGTACCTGGTAAAAAGTTGTCTTCTAAATTAAGGGTCATTGCTTTGTTGTCTAGCTGCTAATGTCTTACTTTTGTTTCTTTTGCTTTTTAATCAGTTCTTAATAGGATATAGTTTTATGTTTTCCAAGTTATAACTTGGAGTTAATGGTCACTAGATTATCAGTTATGAGCAGTGTTAAAATCTCCTATTAATGTGTAATGTACCTGTCAGTGCCTCCTTTATTAAGGGGTTCTTTGAGAATAAAAGAGAAAAGACCTACTTTATTTGACAGCAAAACTGTTCTAATTGTTAATAAGGACTTTTAAAAATTGTTTTTGATTTGCTAAGCTCAGAAAAAATGTCTCTCAGTGCATCAGTTCTTTGTAAAGCTTACTACGAAGTATTTATATGCTAAGGAAAACAACTGAGGATGTGGGTGGCTTAAATCTGTATTTTCATCATGTATGTGAGTTTTTTTTTTTTTAAGTAAAGAAATTTTCTGCAAAGATCGTTACCTTAAAAAAGTTTAGCctgggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagttgaagaccagcttggccaagagggtgaaaccccatttctactaaaaatacaaaagttagccaggtgcagtgacaggcgcctgtaatcccagctactcatgaggccgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccactgcactccagcctgggcgatggagtgagactacgtctcaaaaaaaaaTCGAGAGAGAGatatatatatgtatttatatatatatgtatttatactaatatataaatatatactaatagatatattagtatacatgtagaatgtacctgtcatatatattagatatataaatgtatatattggtataaataaatactagatatatatTTTTTTAAGTATCTTACCTCATCAAGTAAATTCAAATGCTTTTTGATTTTTCCACAGTTGATAATTTTTTTTTGTAAGTCATTGAAGTTATATAGTAATTAGCGTTTTTTCCCCCACAAATTATTGGCAGTGGTCACCCAGTTGTATTACAGGTTCTATGATCCAAAAAGGGATGTATGAAATTCATGATGATTAAGACAAttttttctttctttcttttgagacagagtcttgctgtgtcacccaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcgtcccgggttcaagagattattgtgcctcagcctccagagtagctgggattataagcgtgcgccaccacacccagctaatttttttgtatttttagtagagacggggtttcaccatgttggccagactTAAGACAATTCTTTAATAGTAAATATATTAAAGGTGAGTTGGCTTGACAAGATACAACCAATATGTAATTTTTCTCCACACGttttttttttttttttttttttttttCTGgagacagtcttgctctgttgcccaggctggagtacagtggcgcgatcttggctcactgcaagctctgcctcccgggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgccaccacacccagctaattttttgtctttttagtagagacggggtttcactgtgttaggatggtctcgttctcctgacctcatgatctgcacgaggcctcccaatgtgctgggattacaggcgtgagccaccgtgcgtccccggccTATACCTTTCATTAATTAATAagctgggggaataaataactggatttcattcttttccatcttctgacctgttggtgctcctattgcttgtatccaagtagaaggcaaaaggcaagagacccctgtaatgcagCAAGTGGAGAGATTTGTTGAAGGGGTCAAACAAAACCCTGCAAGAGTAGGAAATAAACAGTTGGCTCCTGTCCTCGTGGAGCTTATAGACAGAAGCAGataacaaataaaaattggagcttagtgccgtggtgcacacttgtagtccctgctactggggaggctaaggcaagaggatcgctatagcctgggaatttgaagctgtagcgtgctatgattgcaagcagcctgggtaacctagtgagacctggctcttaaaTTTAAAATTTAAATGAAAATGGCCACTTAGCATAAGAGATCTAAAATTACGTTTTGTcctggcatggtggctcatgcctgtgacctcagcactttgggaggccgagatgggcgaatcacttgaggtcaggagttcgagaccagcctgggtaacatggtgaaaccctgtctactgaaaatacaaaaattagcttggtgtggtggcgggtgcctgtaatctcagttactcaggaggcttaggcaggagaatcacttgaaccctggaggcagaggttgcagtgagctgagatcacaccactgcacttcagcctgagtgacagagcgagactgtttcaaaaaaaaaaaaaaaaTTTGTTTTGAGAGTTTTTGTGTCTAGGATGTTTGCAGTGTGAAGCCAGTCTAGTAACAGTTTAAATGTAATAATAAATCACAGTGGGTACTAGATTGAGTTTATTCCACTAGAGGTCATTATTTCATTTCCATGTGAAAGGGCTAAAATTGGGTGAAGAAAAAGCTATTTGAACTGATTACCATCATTTGCTATAAAGGAAGCATTATAGTATGAATAGAAAACAGACTAGAGTTTAACATGCTTCTCTTGACCCCTCTTCACCACCCCCTAAAAGGCAGATGGGATCTTAGGACTGCAGCATTTTGTACACATCTGATATTTAATGAGATGTTACATATGAACTTTAGttttttttcttttcttttcttttcttttcttttctttttttttttttgagacagagtctagctctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaaactctgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgagactacaggtgcccaccactatgcccggctaatgttttgtacttttagtagagacggggtttcactgtgttagccaggatggtctgaatctcctgacctcgtgattcgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgtccggccGAACATTAGTTTTTAAAGAAATGTATTATGAATATAGATAGAAAACCCAAAGTGAAGGAATAGAAAATGAAATATCAGTTTCTTTTAATCTATCATAATTATGTGAGCATAACTTAGTATTTTGAAATAGATTAATGTAGTCAGCAAACAATTCATGTATTACCTATAATAGATATCATACATATAACATTTAATAACATACAGTTCTTGTTCCTGAAGACTTAACCTAGAAAATAACTCCATAACAAGAAGAATCTCTGTCATAATAAACCAACAGCAGACATTTTCTAAAGGCATTAAAAGTATATCTGATACTGGCCTTTATTAATGTGAAATTCTTGTGGATCTGTGAAATAAAGAGGAGTACTTTC

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