Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name BNIP3
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name BCL2 interacting protein 3
Also known as HABON|NIP3
Coordinate chr10:131967683-131982013
Strand -
Gene summary This gene is encodes a mitochondrial protein that contains a BH3 domain and acts as a pro-apoptotic factor. The encoded protein interacts with anti-apoptotic proteins, including the E1B 19 kDa protein and Bcl2. This gene is silenced in tumors by DNA methylation. [provided by RefSeq, Dec 2014]

Retrocopy(s) from BNIP3

Retroname Coord Strand Genomic Region ENSG
BNIP3P1 chr14:28264409-28265974 + Intergenic
ENSG00000197358 UCSC
BNIP3P5 chr15:42314085-42314887 + Intragenic
ENSG00000260571 UCSC
BNIP3P3 chr18:15247416-15247563 - Intergenic
ENSG00000265631 UCSC
BNIP3P48 chr19:19812769-19813099 + Intragenic
N/A UCSC
BNIP3P29 chr19:22065812-22066216 - Intragenic
ENSG00000269742 UCSC
BNIP3P39 chr19:23799125-23799338 - Intragenic
ENSG00000269662 UCSC
BNIP3P46 chr21:13120672-13120819 + Intergenic
ENSG00000237202 UCSC
BNIP3P41 chr2:132080269-132080474 - Intergenic
ENSG00000271179 UCSC
BNIP3P47 chr22:16220393-16220540 + Intergenic
N/A UCSC
BNIP3P40 chr2:61249710-61251761 + Intragenic
ENSG00000271146 UCSC
BNIP3P42 chr7:64590586-64590938 - Intergenic
ENSG00000276475 UCSC
BNIP3P43 chr9:40687395-40687542 - Intergenic
N/A UCSC
BNIP3P44 chr9:63486793-63486940 - Intergenic
N/A UCSC
BNIP3P4 chr9:64810850-64810997 - Intergenic
ENSG00000271225 UCSC

Expression

Transcript Sequences

>NM_004052.3
AAGTCGCGGCCAATGGGCGACGCGGCCGCAGATCCGCCCGGCCCCGCCCTGCCCTGTGAGTTCCTCCGGCCGGGCTGCGGGGCTCCGCTCAGTCCGGGAGCGCAGCTGGGCCGCGGCGCTCCGACCTCCGCTTTCCCACCGCCCGCAGCTGAAGCACATCCCGCAGCCCGGCGCGGACTCCGATCGCCGCAGTTGCCCTCTGGCGCCATGTCGCAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGGGCTCCTGGGTAGAACTGCACTTCAGCAATAATGGGAACGGGGGCAGCGTTCCAGCCTCGGTTTCTATTTATAATGGAGACATGGAAAAAATACTGCTGGACGCACAGCATGAGTCTGGACGGAGTAGCTCCAAGAGCTCTCACTGTGACAGCCCACCTCGCTCGCAGACACCACAAGATACCAACAGAGCTTCTGAAACAGATACCCATAGCATTGGAGAGAAAAACAGCTCACAGTCTGAGGAAGATGATATTGAAAGAAGGAAAGAAGTTGAAAGCATCTTGAAGAAAAACTCAGATTGGATATGGGATTGGTCAAGTCGGCCGGAAAATATTCCCCCCAAGGAGTTCCTCTTTAAACACCCGAAGCGCACGGCCACCCTCAGCATGAGGAACACGAGCGTCATGAAGAAAGGGGGCATATTCTCTGCAGAATTTCTGAAAGTTTTCCTTCCATCTCTGCTGCTCTCTCATTTGCTGGCCATCGGATTGGGGATCTATATTGGAAGGCGTCTGACAACCTCCACCAGCACCTTTTGATGAAGAACTGGAGTCTGACTTGGTTCGTTAGTGGATTACTTCTGAGCTTGCAACATAGCTCACTGAAGAGCTGTTAGATCCTGGGGTGGCCACGTCACTTGTGTTTATTTGTTCTGTAAATGCTGCGTTCCTAATTTAGTAAAATAAAAGAATAGACACTAAAATCATGTTGATCTATAATTACACCTATGGGATCAATAAGCATGTCAGACTGATTAATGTCTACTGTGAAAATTTGGTAGTAAATTTTCATTTGATATTAGATATAAATATCTGAATATAAATAATTTTAATATACTAGTCATGATGTGTGTTGTATTTTAAAAATTATCTGCAACCTTAATTCAGCTGAAGTACTTTATATTTCAAAAGAATGAATAACATTGATAATAAAATCGCTACTTTAAGGGGTTTGTCCAAAATAAATATTGTGGCCTTATATATCACACTATTGTAGAAAGTATTATTTAATTTAAATGGATGCAGGTTGTCTACTAAAGAAAGATTATATATAACTATGCTAATTGTTCATAATCAACAGAAACCAAGATAGAGCTACAAACTCAGCTGTACAGTTCGTACACTAAACTCTTCTTGCTTTTGCATTATAAGGAATTAAGTCTCCGATTATTAGGTGATCACCCTGGATGATCAGTTTTCTGCTGAAGGCACCTACTCAGTATCTTTTCCTCTTTATCACTCTGCATTGGTGAATTTAATCCTCTCCTTTGTGTTCAACTTTTGTGTGCTTTTAAAATCAGCTTTATTCTAAGCAAATCTGTGTCTACTTTAAAAAACTGGAAATGGAAAAAAAAATAAATCTTTGCCAAATCCTTCAGAT