Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Cdc5l
Plot displaying the genomic locations of a parental gene (in chr17) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name cell division cycle 5-like (S. pombe)
Also known as 1200002I02Rik|PCDC5RP
Coordinate chr17:45702813-45744633
Strand -
Gene summary Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including DNA damage checkpoint signaling; cellular response to nerve growth factor stimulus; and cellular response to wortmannin. Predicted to act upstream of or within DNA repair; RNA splicing; and mRNA processing. Predicted to be located in nuclear speck and perinuclear region of cytoplasm. Predicted to be part of DNA replication factor A complex; Prp19 complex; and U2-type catalytic step 2 spliceosome. Is expressed in several structures, including branchial arch; early conceptus; genitourinary system; limb; and maxillary process. Human ortholog(s) of this gene implicated in osteosarcoma. Orthologous to human CDC5L (cell division cycle 5 like). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cdc5l

Retroname Coord Strand Genomic Region ENSG
Cdc5lP2 chr16:81647756-81650081 - Intergenic
 ENSMUSG00000116954 UCSC
Cdc5lP1 chr10:118074185-118076812 - Intergenic
 ENSMUSG00000112216 UCSC

Expression

Transcript Sequences

>NM_152810.2
CTGCGCGCGACACGTCGGGCGCCTTGGCACCTGCGGTTTGATTAGTCTCCATCAGTCTTAAGGTTGCAGCCTGGCCGCCCGCGTCTTTTGCCTTCGGCCGCTAAGATCTCGCGAGATTTCCCGGGGCTGCCCACGCCGCGCCTGCGCAGAGCTCTTCAAAGCAGAAGGTCGCTCTTGGGAGGAAGTGGCCTTTTGCGTCCCGTGCCCGGAGCGCCGTTACTACTTTCTCGAAGCTCTCCTCGGCTCCCTTGCCGGGACACTCTGCCGCTAAGATGCCCCGGATTATGATCAAAGGGGGAGTGTGGAGGAACACGGAGGATGAAATTCTGAAAGCAGCGGTAATGAAATATGGGAAAAACCAGTGGTCTAGGATTGCCTCATTGCTGCATAGGAAATCGGCAAAGCAGTGCAAAGCCAGATGGTACGAATGGCTGGATCCAAGTATTAAAAAAACTGAATGgtccagagaagaggaagaaaaactctTGCACCTGGCCAAGCTGATGCCAACGCAGTGGAGGACCATTGCTCCgatcataggaagaacagcagcccAGTGCTTGGAACACTATGAGTTCCTCCTggACAAAACTGCCCAAAGGGACAATGAAGAAGAAACAACAGATGACCCCCGAAAGCTTAAGCCTGGAGAGATAGATCCAAACCCAGAGACCAAGCCAGCCCGGCCTGACCCGATAGACATGGATGAGGATGAACTTGAGATGCTCTCCGAGGCTCGAGCCCGTCTGGCCAATACTCAAGGAAAGAAGGCtaaaaggaaagcaagagaaaagcagttGGAAGAAGCCAGGCGCCTTGCTGCCCTCCAGAAAAGACGAGAGCTTCGAGCAGCTGGCATAGAGattcagaagaaaaggaaaaagaagagaggcgTTGATTATAATGCTGAAATCCCATTTGAAAAAAAGCCTGCTCTTGGTTTTTATGATACTTCTGAGGAGAATTACCAGGCCCTTGATGCAGATTTCAGGAAACTGCGGCAGCAGGATCTTGATGGAGAGCTAAGATCtgaaaaagaaggaagagataggaaaaaagacaaacagcatttaaaaaggaaaaaggagtctGATTTACCATCAGCTATCCTCCAAACCAGTGGTGTCTCTGAGTTCACTAAAAAGAGAAGCAAACTTGTGTTGCCTGCGCCTCAGATTTCAGATGCTGAACTCCAGGAAGTTGTCAAGGTAGGCCAGGCCAGTGAAGTCGCACGGCAGACGGCGGAGGAGTCAGGAATAACAAACTCTGCTTCTAGCACTCTCCTGTCTGAGTACAATGTCACAAACAACAGCATCGCTCTGAGAACACCACGGACACCAGCCTCTCAAGACAGGATTCTACAGGAAGCTCAGAACCTCATGGCCTTGACCAATGTGGACACTCCATTGAAAGGTGGGCTTAATACCCCACTGCATGAGAGTGACTTCTCTGGTGTGACCCCACAGCGGCAAGTTGTGCAGACTCCAAATACAGTTCTGTCTACCCCTTTCAGGACTCCTTCTAATGGAGCTGAAGGGCTGACTCCCCGAAGTGGAACAACTCCTAAACCAGTCACTAATGCCACCCCAGGTAGAACACCACTTAGAGACAAGTTAAACATTAATCCAGAGGATGGAATGGCAGACTACAGTGACCCCTCTTACGTGAAGCAGATGGAAAGAGAATCTCGTGAACATCTCCGTTTAGGGTTGTTAGGCCTCCCCGCACCTAAGAATGATTTTGAAATTGTTCTGCCTGAAAATGCCGAGAAGGAACTAGAAGAACGTGAAATAGATGATACCTACATTGAAGATGCTGCTGATGTGGATGCTCGAAAGCAGGCCATCCGAGATGCTGAGCGTGTAAAGGAAATGAAACGAATGCATAAAGCTGTTCAGAAGGATCTGCCCAGGCCGTCTGAAgtAAATGAAACTATTTTAAGACCTTTAAATGTAGAACCACCTCTAACAGATTTACAGAAGAGTGAAGAACTGatcaaaaaagaaatgattaCGATGCTTCATTATGATCTTCTACATCATCCCTACGAACCAtctggaaataaaaaaggaaaaaatgttggGTTTGCTACCAACAATTCAGAGCACATTACCTATCTTGAGCACAGCCCTTATGAGAAGTTCTCCAAAGAAGATCTGAAAAAGGCCCAGGATGCTCTGgtacaagagatggaagtggTCAAACAAGGAATGAGCCATGGCGAACTCTCCAGTGAAGCTTACAACCAGGTGTGGGAGGAATGCTACAGTCAAGTCCTCTATCTTCCTGCTCAGAGCCGCTACACTCGTGCTAATCTTGCTAGCAAAAAGGACAGAATTGAATCACTTGAAAAGAGACTTGAGATAAACAGGGGTCACATGACAACAGAAGCCAAGAGAGCTGCAAAGATGGAAAAGAAGATGAAGATTTTGCTTGGTGGTTACCAGTCTCGTGCTATGGGGCTCATGAAGCAGTTGAATGACTTATGGGACCAGATTGAGCAGGCTCACTTGGAGCTACGCACTtttgaagaactcaagaaacatgAAGACTCTGCTATTCCCCGTAGGCTAGAGtGTCTAAAAGAAGATGTGCAGCGGCAACAGGAACGAGAGAAAGAGCTTCAGCAGAGATACGCGGATTTGCTGATGGAGAAAGAGACTTTACAGGCAAAGTTCTGAAGCACAGTGGATGCTCTGCCACAGGAGATCGAGTTGCTGGTTTCCTACTCAGCAAGGCTGAACTGAGCTTCCTCTTCATTGACAAGTTACCCAGCACCGTGGTTTCtcagttgtttgttttgaatgaTACTGATCTTTGCGTTCCGTGTTACAGACTTGGACTCCAGGATAATGAGGGTTTAAATTATCCAGATGCTCATTCTTTGCCAGTGTCATATTTACAAAATTTCGTAGTTTAGGCCTTTAATTTAAAAAGCCTGACTTTAAATACTGCCTGTGAGTAAACCCTTGAATAAAAAGAACATGTGAAAaa