Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Cdc5lP1
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr10:118074185-118076812  UCSC
Strand -
Parental Sequence NM_152810.2
Parental seq. overlap 2542 bp
Parental seq. overlap (%) 84.4%
Genomic Region Intergenic
Retrocopy Summary Cdc5lP1, located on chr10:118074185-118076812, is a retrocopy of the parental gene Cdc5l. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Cdc5l
Full Name cell division cycle 5-like (S. pombe)
Also known as 1200002I02Rik|PCDC5RP
Coordinate chr17:45702813-45744633
Strand -
Gene summary Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including DNA damage checkpoint signaling; cellular response to nerve growth factor stimulus; and cellular response to wortmannin. Predicted to act upstream of or within DNA repair; RNA splicing; and mRNA processing. Predicted to be located in nuclear speck and perinuclear region of cytoplasm. Predicted to be part of DNA replication factor A complex; Prp19 complex; and U2-type catalytic step 2 spliceosome. Is expressed in several structures, including branchial arch; early conceptus; genitourinary system; limb; and maxillary process. Human ortholog(s) of this gene implicated in osteosarcoma. Orthologous to human CDC5L (cell division cycle 5 like). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Cdc5lP1
aAAGCAGAAGGTCACTCTTGGGAGGAAGTGGCCTCTTGCGTCCCGTGTCCCGTGACCGGAGCACCGTTACTACTCTCTCGAAGCTCCTCTCGGCCCCCTTGCCGAGACACTCCACTCCGCTGCCAAGATGCCCCGGATTATGATCAAAGGAGGAGTGTGGAGGAACACGGAGGATGAAATTCTGAAAGCAGCGGTAATGAAATATGGGAAAAACCAGTGGTCTAGGATTGCCTCGTTGCTGCATAGGAAATCGGCAAAGCAGTGCAAAGCCAGATGGTACGAATGGCTGGATCCAAGTATTAAAAAAACTGAATGgtccagagaagaggaagaaaaactctTGCACCTGGCCAAGCTGATGCCAACGCAGTGGAGGACCATTGCTCCaatcataggaagaacagcagcccAGTGCCTGGAACACTATGAATTCCTCTTGGACAAAACTGCTCAAAGGGACAATGAAGAGGAAACAACAGATGACCCCCGAAAGCTTAAGCCTGGAGAGATCGATCCAAACCCAGAGACCAAGCCAGCCCGGCCGGACCCAATTGACATGGATGAGGATGAACTTGAGATGCTCTCTGAGGCTCGAGCCCGTCTGGCCAATACTCAAGGAAAGAAGGCtaaaaggaaagcaagagaaaagcagttGGAAGAAGCCAGGCGCCTTGCTGCCCTCCAGAAAAGACGAGAGCTTCGAGCAGCTGGCATAGAGattcagaagaaaaggaaaaggaagagaggtgtTGATTATAATGCTGAAATCCCATTTGAAAAAAAGCCAGCTCTTGGTTTTTATGATACTTCTGAGGAGAATTACCAGGCCCTTGATGCAGACTTCAGGAAAATGCGACAGCAGGATCTTGATGGGGAGCTAAGAtctgaaaaagaaggaagagatagaaaaacagacaaacagcgtttaaaaaggaaaaaggagtctGATTTACCATCAGCTATCCTCCAAACCAGTGGTGTCTCCGAGTTCACTAAAAAGAGAAGCAAACTTGTGTTGCCTGCGCCTCAGATTTCAGATGCTGAACTCCAGGAAGTTGTCAAGGTAGGCCAGGCCAGTGAAGTCGCACGGCAGACGGCGGAGGAGTCAGGAATAACAAACTCTGCTTCTAGCACTCTCCTGTCTGAGTACAATGTCACAAACAACAGCATCGCTCTGAGAACACCACGGACACCAGCCCCTCAAGACAGGATTCTACAGGAAGCTCAGAACCTCATGGCCTTGACCAATGTGGACACTCCGTTGATAGGTGGGCTTAATACCCCACTGCATGAGAGTGACTTCTCTGGTGTGACCCCACAGCAGCAAGTTGTGCAGACTCCAAATACAGTTCTGTCTACCCCTCTCAGGACTCCTTCTAATGGAGCTGAAGGGCTGACTCCCCGAAGTGGAACAACTCCTAAACCAGTCACTAATGCCACCCCAGGTAGAACACCACTTAGAGACAAGTTACACATTAATCCAGAGGATGGAATGGCAGACCACAGTGACCCCTCTTACGTGAAGCAGATGGAAAGAGAATCTCGTGAACATCTCCGTCTCGGGTTCTTAGGCCTCCCTGCACCTAAGAACGATTTTGAAATCGTTCTGCCTGAAAATGCCGAGAAGGAACTGGAAGAACGTGAAATAGATGATACCTACATTGAAGATGCTGCTGATGTGGATGCTCGAAAGCAGGCCACCCGAGATGCTGAGCGTGTAAAGGAAATGAAACGAATGCACAAAGCCGTTCAGAAGGATCTGCCCAGGCCGTCTGAAGTAAATGAAACTATTTTAAGACCTTTCGATGTAGAACCACCTCTAACAGATTTACAGAAGAGCGAAGAACTGatcaaaaaagaaatgattaCGATGCTTCATTATGATCTTCTACATCATCCCTACGAACCATCtggaaacaaaaaaggaaaaaatgttggGTTTGCTACCAACGATTCAGAGCACATTACTTATCTTGAGCATAGCCCTTATGAGAAGTTCTCCAAAGAAGATCTGAAAAAGGCCCAGGATGCTCTGgtacaagagatggaagtggTCAAACAAGGAATGAGCCATGGAGAACTCTCCAGTGAAGCTTACAACCAGGTGTGGGAGGAATGCTACAGTCAAGTCCTCTATCTTCCTGCTCAGAGCTGCTACACTCGCGCTAATCTTGCTAGCAAAAAGGACAGAATTGAATCACTTGAAAAGAGACTTGAGATAAACAGGGGTCACATGACAACAGAAGCCAAGAGAGCTGCAAAGATGGAAAAGAAGATGAAGATTTTGCTTGGTGGATACCAGTCTCGTGCTATGGGGCTCATGAAACAGTTGAATGACTTATGGGACCAGATTGAGCAGGCTCACTTGGAGCTACGCACTtttgaagaactcaagaaacatgAAGACTCTGCTATTCCCCGTAGGCTAGAGTGTCTAGAAGAAGATGTGCAGCGGCAACAGGAACGAGAGAAAGAGCTTCAACAGAGATACGCGGATTTGCTGATGGAGAAAGAGACTTTACAGGCAAAGTTCTGAAGCACAGTGGATGGATGCTCTGCCACAGGAGAGCGAGTTCCTGGTTTCCTACTCAGCAAGGCTGAACTGAGCTTCTTCTTCATTGCCAAGTC
>NM_152810.2
CTGCGCGCGACACGTCGGGCGCCTTGGCACCTGCGGTTTGATTAGTCTCCATCAGTCTTAAGGTTGCAGCCTGGCCGCCCGCGTCTTTTGCCTTCGGCCGCTAAGATCTCGCGAGATTTCCCGGGGCTGCCCACGCCGCGCCTGCGCAGAGCTCTTCAAAGCAGAAGGTCGCTCTTGGGAGGAAGTGGCCTTTTGCGTCCCGTGCCCGGAGCGCCGTTACTACTTTCTCGAAGCTCTCCTCGGCTCCCTTGCCGGGACACTCTGCCGCTAAGATGCCCCGGATTATGATCAAAGGGGGAGTGTGGAGGAACACGGAGGATGAAATTCTGAAAGCAGCGGTAATGAAATATGGGAAAAACCAGTGGTCTAGGATTGCCTCATTGCTGCATAGGAAATCGGCAAAGCAGTGCAAAGCCAGATGGTACGAATGGCTGGATCCAAGTATTAAAAAAACTGAATGgtccagagaagaggaagaaaaactctTGCACCTGGCCAAGCTGATGCCAACGCAGTGGAGGACCATTGCTCCgatcataggaagaacagcagcccAGTGCTTGGAACACTATGAGTTCCTCCTggACAAAACTGCCCAAAGGGACAATGAAGAAGAAACAACAGATGACCCCCGAAAGCTTAAGCCTGGAGAGATAGATCCAAACCCAGAGACCAAGCCAGCCCGGCCTGACCCGATAGACATGGATGAGGATGAACTTGAGATGCTCTCCGAGGCTCGAGCCCGTCTGGCCAATACTCAAGGAAAGAAGGCtaaaaggaaagcaagagaaaagcagttGGAAGAAGCCAGGCGCCTTGCTGCCCTCCAGAAAAGACGAGAGCTTCGAGCAGCTGGCATAGAGattcagaagaaaaggaaaaagaagagaggcgTTGATTATAATGCTGAAATCCCATTTGAAAAAAAGCCTGCTCTTGGTTTTTATGATACTTCTGAGGAGAATTACCAGGCCCTTGATGCAGATTTCAGGAAACTGCGGCAGCAGGATCTTGATGGAGAGCTAAGATCtgaaaaagaaggaagagataggaaaaaagacaaacagcatttaaaaaggaaaaaggagtctGATTTACCATCAGCTATCCTCCAAACCAGTGGTGTCTCTGAGTTCACTAAAAAGAGAAGCAAACTTGTGTTGCCTGCGCCTCAGATTTCAGATGCTGAACTCCAGGAAGTTGTCAAGGTAGGCCAGGCCAGTGAAGTCGCACGGCAGACGGCGGAGGAGTCAGGAATAACAAACTCTGCTTCTAGCACTCTCCTGTCTGAGTACAATGTCACAAACAACAGCATCGCTCTGAGAACACCACGGACACCAGCCTCTCAAGACAGGATTCTACAGGAAGCTCAGAACCTCATGGCCTTGACCAATGTGGACACTCCATTGAAAGGTGGGCTTAATACCCCACTGCATGAGAGTGACTTCTCTGGTGTGACCCCACAGCGGCAAGTTGTGCAGACTCCAAATACAGTTCTGTCTACCCCTTTCAGGACTCCTTCTAATGGAGCTGAAGGGCTGACTCCCCGAAGTGGAACAACTCCTAAACCAGTCACTAATGCCACCCCAGGTAGAACACCACTTAGAGACAAGTTAAACATTAATCCAGAGGATGGAATGGCAGACTACAGTGACCCCTCTTACGTGAAGCAGATGGAAAGAGAATCTCGTGAACATCTCCGTTTAGGGTTGTTAGGCCTCCCCGCACCTAAGAATGATTTTGAAATTGTTCTGCCTGAAAATGCCGAGAAGGAACTAGAAGAACGTGAAATAGATGATACCTACATTGAAGATGCTGCTGATGTGGATGCTCGAAAGCAGGCCATCCGAGATGCTGAGCGTGTAAAGGAAATGAAACGAATGCATAAAGCTGTTCAGAAGGATCTGCCCAGGCCGTCTGAAgtAAATGAAACTATTTTAAGACCTTTAAATGTAGAACCACCTCTAACAGATTTACAGAAGAGTGAAGAACTGatcaaaaaagaaatgattaCGATGCTTCATTATGATCTTCTACATCATCCCTACGAACCAtctggaaataaaaaaggaaaaaatgttggGTTTGCTACCAACAATTCAGAGCACATTACCTATCTTGAGCACAGCCCTTATGAGAAGTTCTCCAAAGAAGATCTGAAAAAGGCCCAGGATGCTCTGgtacaagagatggaagtggTCAAACAAGGAATGAGCCATGGCGAACTCTCCAGTGAAGCTTACAACCAGGTGTGGGAGGAATGCTACAGTCAAGTCCTCTATCTTCCTGCTCAGAGCCGCTACACTCGTGCTAATCTTGCTAGCAAAAAGGACAGAATTGAATCACTTGAAAAGAGACTTGAGATAAACAGGGGTCACATGACAACAGAAGCCAAGAGAGCTGCAAAGATGGAAAAGAAGATGAAGATTTTGCTTGGTGGTTACCAGTCTCGTGCTATGGGGCTCATGAAGCAGTTGAATGACTTATGGGACCAGATTGAGCAGGCTCACTTGGAGCTACGCACTtttgaagaactcaagaaacatgAAGACTCTGCTATTCCCCGTAGGCTAGAGtGTCTAAAAGAAGATGTGCAGCGGCAACAGGAACGAGAGAAAGAGCTTCAGCAGAGATACGCGGATTTGCTGATGGAGAAAGAGACTTTACAGGCAAAGTTCTGAAGCACAGTGGATGCTCTGCCACAGGAGATCGAGTTGCTGGTTTCCTACTCAGCAAGGCTGAACTGAGCTTCCTCTTCATTGACAAGTTACCCAGCACCGTGGTTTCtcagttgtttgttttgaatgaTACTGATCTTTGCGTTCCGTGTTACAGACTTGGACTCCAGGATAATGAGGGTTTAAATTATCCAGATGCTCATTCTTTGCCAGTGTCATATTTACAAAATTTCGTAGTTTAGGCCTTTAATTTAAAAAGCCTGACTTTAAATACTGCCTGTGAGTAAACCCTTGAATAAAAAGAACATGTGAAAaa

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