| Name | Painted Turtle |  |
 |
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| Sci Name | Chrysemys picta | |||
| Assembly_ID | GCF_000241765.4 | |||
| Assembly_Name | Chrysemys_picta_BioNano-3.0.4 |  |
||
| # of retrocopies | 111 | |||
| # of Parental genes | 103 |
| Retroname | Chr | Start | End | Strand | Ensembl | |
|---|---|---|---|---|---|---|
| ABCF1P1 | chr2 | 48468914 | 48469136 | - | N/A | UCSC |
| ACSF3P1 | chr5 | 28187570 | 28187710 | + | N/A | UCSC |
| ACTA1P1 | chr9 | 9484763 | 9485986 | + | N/A | UCSC |
| ACTG1P1 | chr3 | 55185484 | 55185813 | + | N/A | UCSC |
| ACTG1P2 | chr24 | 11081240 | 11083227 | - | N/A | UCSC |
| AKR7A2P1 | chr3 | 116718319 | 116719133 | - | N/A | UCSC |
| ATP5IF1P1 | chr9 | 24443356 | 24443638 | + | N/A | UCSC |
| ATP5POP1 | chr1 | 122635620 | 122636031 | - | N/A | UCSC |
| ATP6V0BP1 | chr15 | 7899164 | 7900004 | + | N/A | UCSC |
| BEND5P1 | chr9 | 24077177 | 24081450 | - | N/A | UCSC |
| CHKBP1 | chr7 | 27691697 | 27692296 | - | N/A | UCSC |
| CLCN7P1 | chr8 | 14184079 | 14185010 | - | N/A | UCSC |
| CLNS1AP1 | chr9 | 51789248 | 51789372 | + | N/A | UCSC |
| CNIH1P1 | chr7 | 20640801 | 20641099 | + | N/A | UCSC |
| CRYBG1P1 | chr3 | 101919645 | 101921171 | - | N/A | UCSC |
| CUNH20orf27P1 | chr3 | 59913629 | 59914060 | - | N/A | UCSC |
| DNTTIP1P1 | chr3 | 21644633 | 21645585 | + | N/A | UCSC |
| DUSP23P1 | chr9 | 19318542 | 19321027 | + | N/A | UCSC |
| EEF1AKMT3P1 | chr18 | 10233745 | 10234116 | + | N/A | UCSC |
| ENTPD7P1 | chr1 | 53229587 | 53230119 | - | N/A | UCSC |
| EPB41P1 | chr2 | 103648705 | 103649984 | + | N/A | UCSC |
| ETF1P1 | chr7 | 27303756 | 27304000 | - | N/A | UCSC |
| FUNDC1P1 | chr4 | 29331053 | 29331194 | - | N/A | UCSC |
| GMPPAP1 | chr3 | 119385538 | 119386962 | + | N/A | UCSC |
| GRSF1P1 | chr8 | 65276184 | 65276604 | + | N/A | UCSC |
| GTF2A2P1 | chr6 | 3301193 | 3301451 | - | N/A | UCSC |
| HAS1P1 | chr15 | 2785541 | 2785742 | - | N/A | UCSC |
| HSD17B4P1 | chr3 | 3973422 | 3973574 | - | N/A | UCSC |
| HSPA14P1 | chr13 | 15116174 | 15116360 | + | N/A | UCSC |
| ISCUP1 | chr8 | 68567383 | 68567884 | - | N/A | UCSC |
| KDM5AP1 | chr7 | 9398007 | 9398605 | + | N/A | UCSC |
| LGALS3P1 | chr9 | 13724719 | 13724966 | + | N/A | UCSC |
| LOC101930867P1 | chr5 | 7555863 | 7558824 | - | N/A | UCSC |
| LOC101930990P1 | chr9 | 34784923 | 34785397 | - | N/A | UCSC |
| LOC101930990P2 | chr20 | 7924301 | 7924666 | - | N/A | UCSC |
| LOC101932291P1 | chr2 | 109187615 | 109187781 | - | N/A | UCSC |
| LOC101932594P1 | chr1 | 60982452 | 60982622 | + | N/A | UCSC |
| LOC101933555P1 | chr2 | 119719916 | 119720473 | - | N/A | UCSC |
| LOC101937984P1 | chr1 | 55775121 | 55775294 | - | N/A | UCSC |
| LOC101938985P1 | chr3 | 55059856 | 55060076 | + | N/A | UCSC |
| LOC101939684P1 | chr18 | 302580 | 302706 | + | N/A | UCSC |
| LOC101939802P1 | chr3 | 55060079 | 55060274 | + | N/A | UCSC |
| LOC101942276P1 | chr3 | 72841957 | 72842199 | - | N/A | UCSC |
| LOC101945627P1 | chr3 | 98462629 | 98463121 | - | N/A | UCSC |
| LOC101946266P1 | chr3 | 44641111 | 44642034 | - | N/A | UCSC |
| LOC101950562P1 | chr1 | 14913252 | 14913798 | + | N/A | UCSC |
| LOC101951139P1 | chr9 | 102593869 | 102594307 | - | N/A | UCSC |
| LOC101953504P1 | chr13 | 141257 | 142193 | - | N/A | UCSC |
| LOC101953696P1 | chr5 | 16940747 | 16941092 | + | N/A | UCSC |
| LOC101953696P2 | chr13 | 1603256 | 1603579 | + | N/A | UCSC |
| LOC122173095P1 | chr1 | 3858061 | 3858842 | - | N/A | UCSC |
| LOC122173095P2 | chr9 | 70286051 | 70289415 | - | N/A | UCSC |
| LSM5P1 | chr20 | 4560667 | 4561029 | - | N/A | UCSC |
| LTV1P1 | chr3 | 112948602 | 112948959 | - | N/A | UCSC |
| MCL1P1 | chr2 | 98984171 | 98984784 | + | N/A | UCSC |
| MCL1P2 | chr4 | 24073560 | 24073918 | - | N/A | UCSC |
| MIOSP1 | chr4 | 30189193 | 30189659 | + | N/A | UCSC |
| MRPL21P1 | chr5 | 32931474 | 32931784 | - | N/A | UCSC |
| NAA35P1 | chr1 | 31674800 | 31675065 | + | N/A | UCSC |
| NAPEPLDP1 | chr17 | 5418740 | 5419450 | - | N/A | UCSC |
| NDUFAB1P1 | chr15 | 33036410 | 33036667 | + | N/A | UCSC |
| NDUFB2P1 | chr7 | 28892830 | 28893108 | + | N/A | UCSC |
| NDUFS4P1 | chr8 | 42119862 | 42120160 | + | N/A | UCSC |
| NOM1P1 | chr3 | 138215761 | 138217981 | + | N/A | UCSC |
| NSD1P1 | chr1 | 31287731 | 31288488 | - | N/A | UCSC |
| OAZ1P1 | chr3 | 70579758 | 70580072 | - | N/A | UCSC |
| PABPC1P1 | chr3 | 47221781 | 47222179 | + | N/A | UCSC |
| PLXNA2P1 | chr5 | 18630005 | 18630204 | + | N/A | UCSC |
| POU5F1P1 | chr18 | 171950 | 172125 | + | N/A | UCSC |
| PPP2CBP1 | chr13 | 4767951 | 4768328 | + | N/A | UCSC |
| RAF1P1 | chr6 | 716056 | 716402 | + | N/A | UCSC |
| RAP2CP1 | chr9 | 74348093 | 74348471 | + | N/A | UCSC |
| RPL17P1 | chr1 | 87459509 | 87460036 | - | N/A | UCSC |
| RPL17P2 | chr20 | 3428812 | 3429374 | + | N/A | UCSC |
| RPL18P1 | chr20 | 11021452 | 11021742 | + | N/A | UCSC |
| RPL21P1 | chr3 | 57486287 | 57486495 | - | N/A | UCSC |
| RPL23P1 | chr1 | 41414556 | 41414931 | - | N/A | UCSC |
| RPL36AP1 | chr5 | 4980412 | 4981197 | + | N/A | UCSC |
| RPL36P1 | chr8 | 782101 | 782307 | - | N/A | UCSC |
| RPL38P1 | chr1 | 24144867 | 24145063 | - | N/A | UCSC |
| RPP21P1 | chr4 | 34830538 | 34830745 | + | N/A | UCSC |
| RPS10P1 | chr5 | 5062567 | 5063127 | + | N/A | UCSC |
| RPS11P1 | chr20 | 5609704 | 5610225 | + | N/A | UCSC |
| RPS14P1 | chr15 | 24478923 | 24479116 | + | N/A | UCSC |
| RPS14P2 | chr17 | 18609180 | 18609310 | + | N/A | UCSC |
| RPS15P1 | chr8 | 65048942 | 65049412 | - | N/A | UCSC |
| RPS18P1 | chr2 | 77397782 | 77397995 | - | N/A | UCSC |
| RPS20P1 | chr3 | 9260683 | 9260937 | - | N/A | UCSC |
| RPS26P1 | chr4 | 37847182 | 37847543 | - | N/A | UCSC |
| RPS27P1 | chr18 | 5409360 | 5409834 | + | N/A | UCSC |
| RPS28P1 | chr8 | 82667709 | 82667851 | + | N/A | UCSC |
| RPS3AP1 | chr13 | 17717376 | 17718043 | + | N/A | UCSC |
| RPS3P1 | chr3 | 9392296 | 9392814 | - | N/A | UCSC |
| RPS8P1 | chr2 | 67235572 | 67236102 | + | N/A | UCSC |
| RRAGDP1 | chr2 | 100645944 | 100646458 | - | N/A | UCSC |
| SLC25A3P1 | chr8 | 87017763 | 87017984 | - | N/A | UCSC |
| SNRPB2P1 | chr3 | 61639663 | 61639861 | - | N/A | UCSC |
| SNRPFP1 | chr4 | 6028042 | 6028387 | - | N/A | UCSC |
| SNRPFP2 | chr8 | 4695293 | 4695581 | - | N/A | UCSC |
| SPCS1P1 | chr5 | 50993155 | 50993654 | + | N/A | UCSC |
| SPPL2BP1 | chr1 | 75408317 | 75408487 | - | N/A | UCSC |
| SPPL2BP2 | chr7 | 6057904 | 6058087 | + | N/A | UCSC |
| TMED2P1 | chr2 | 69147494 | 69147902 | + | N/A | UCSC |
| TPT1P1 | chr8 | 71124265 | 71124633 | + | N/A | UCSC |
| TUBBP1 | chr15 | 3103162 | 3104183 | - | N/A | UCSC |
| TXNDC5P1 | chr9 | 105874472 | 105874659 | + | N/A | UCSC |
| UBE2E1P1 | chr2 | 890554 | 890747 | + | N/A | UCSC |
| VTCN1P1 | chr3 | 113971586 | 113972626 | + | N/A | UCSC |
| WSB2P1 | chr3 | 63140440 | 63140960 | + | N/A | UCSC |
| ZDHHC3P1 | chr8 | 89375307 | 89375761 | + | N/A | UCSC |
| ZNF410P1 | chr2 | 138297299 | 138299591 | - | N/A | UCSC |