| Name | Chicken |  |
 |
 |
| Sci Name | Gallus gallus | |||
| Assembly_ID | GCF_000002315.6 | |||
| Assembly_Name | galGal6 |  |
||
| # of retrocopies | 115 | |||
| # of Parental genes | 95 |
| Retroname | Chr | Start | End | Strand | Ensembl | |
|---|---|---|---|---|---|---|
| ACTA2P1 | chr18 | 9189352 | 9189691 | + | N/A | UCSC |
| ACTBP1 | chr3 | 40089749 | 40090075 | - | N/A | UCSC |
| ACTBP2 | chr5 | 32482135 | 32482465 | + | N/A | UCSC |
| ACTBP3 | chr10 | 2969651 | 2970775 | + | N/A | UCSC |
| AIFM1P1 | chrZ | 79346922 | 79347133 | - | N/A | UCSC |
| ANKRD13CP1 | chrZ | 30444053 | 30445239 | + | N/A | UCSC |
| ARF3P1 | chr5 | 57851607 | 57851847 | + | N/A | UCSC |
| ARL8AP1 | chrZ | 31941142 | 31942287 | - | ENSGALG00000052632 | UCSC |
| ASIC4P1 | chr2 | 332462 | 332627 | - | N/A | UCSC |
| ATP6V0D1P1 | chr1 | 22625722 | 22625926 | + | N/A | UCSC |
| BCORP1 | chr10 | 12062631 | 12063181 | - | N/A | UCSC |
| BORL1P1 | chr14 | 11610272 | 11610485 | + | N/A | UCSC |
| BORL4P1 | chr1 | 157091763 | 157092098 | + | N/A | UCSC |
| BUD13P1 | chr5 | 32651062 | 32651649 | + | N/A | UCSC |
| C1H12ORF45P1 | chr2 | 76710352 | 76710581 | + | N/A | UCSC |
| CARNMT1P1 | chr23 | 396094 | 396369 | - | N/A | UCSC |
| CCT5P1 | chr4 | 22759857 | 22760186 | + | N/A | UCSC |
| CHIR-B2P1 | chr8 | 296446 | 297452 | - | N/A | UCSC |
| CHIR-B2P2 | chr31 | 3417357 | 3418199 | + | N/A | UCSC |
| CHIR-B2P3 | chr31 | 6081453 | 6082294 | + | N/A | UCSC |
| CNNM2P1 | chr12 | 4047809 | 4048312 | - | N/A | UCSC |
| CYB5BP1 | chr1 | 182978402 | 182978891 | + | N/A | UCSC |
| DNAJC19P1 | chr3 | 64549908 | 64550633 | - | N/A | UCSC |
| DUSP8P1 | chr1 | 17839537 | 17839817 | - | N/A | UCSC |
| EGFRP1 | chr1 | 128855585 | 128857148 | + | N/A | UCSC |
| ERLIN2P1 | chr1 | 148533489 | 148533892 | - | N/A | UCSC |
| ETV5P1 | chr7 | 22358611 | 22358771 | + | N/A | UCSC |
| F-KERP1 | chr1 | 155892602 | 155893350 | + | ENSGALG00000051914 | UCSC |
| F-KERP2 | chr25 | 3120226 | 3120648 | - | ENSGALG00000038424 | UCSC |
| FAIMP1 | chr6 | 17439037 | 17439407 | + | N/A | UCSC |
| FAM188AP1 | chr1 | 111380172 | 111380572 | + | N/A | UCSC |
| FAM46AP1 | chr23 | 1965143 | 1965400 | - | N/A | UCSC |
| FSD1LP1 | chr7 | 2826067 | 2826232 | - | N/A | UCSC |
| GAPDHP1 | chr1 | 153326673 | 153327018 | + | N/A | UCSC |
| GEMIN6P1 | chr5 | 48840065 | 48840263 | - | N/A | UCSC |
| GINS2P1 | chrW | 6438922 | 6439360 | - | ENSGALG00000050879 | UCSC |
| HH3LP1 | chr1 | 48076383 | 48076796 | - | ENSGALG00000048231 | UCSC |
| HINTWP1 | chr2 | 108737265 | 108737604 | - | ENSGALG00000035863 | UCSC |
| HINTWP2 | chrW | 4617992 | 4618252 | + | N/A | UCSC |
| HIST1H2A4P1 | chr12 | 9524602 | 9524964 | + | ENSGALG00000026449 | UCSC |
| HNRNPH3P1 | chr3 | 12421411 | 12422825 | - | ENSGALG00000050652 | UCSC |
| HP1BP3P1 | chrZ | 65403831 | 65404755 | + | N/A | UCSC |
| HPCAL4P1 | chr23 | 5444694 | 5444865 | + | N/A | UCSC |
| HSPA5P1 | chr5 | 16176472 | 16177571 | + | N/A | UCSC |
| HSPA8P1 | chr5 | 53058670 | 53059425 | - | ENSGALG00000011715 | UCSC |
| KAT6BP1 | chr4 | 41557113 | 41557743 | - | N/A | UCSC |
| KATNB1P1 | chr5 | 7330324 | 7330643 | + | N/A | UCSC |
| KLHL42P1 | chr2 | 33190016 | 33190234 | + | N/A | UCSC |
| LCP1P1 | chr5 | 17428602 | 17428943 | - | N/A | UCSC |
| LOC100859466P1 | chr27 | 2689140 | 2689503 | + | N/A | UCSC |
| LOC107049075P1 | chr1 | 47383633 | 47383994 | - | N/A | UCSC |
| LOC107049730P1 | chr13 | 2369108 | 2370373 | + | N/A | UCSC |
| LOC112529937P1 | chr5 | 664667 | 664915 | + | N/A | UCSC |
| LOC112530271P1 | chr1 | 76045902 | 76048644 | - | N/A | UCSC |
| LOC112530271P2 | chr1 | 77324433 | 77326265 | + | N/A | UCSC |
| LOC112530271P3 | chr1 | 78514513 | 78516404 | - | N/A | UCSC |
| LOC112530271P4 | chr20 | 2511802 | 2512460 | - | N/A | UCSC |
| LOC112530271P5 | chr33 | 6135130 | 6136864 | - | N/A | UCSC |
| LOC112531016P1 | chr10 | 1024626 | 1024775 | - | N/A | UCSC |
| LOC112531124P1 | chr8 | 257288 | 257541 | + | N/A | UCSC |
| LOC112531124P2 | chr31 | 3305703 | 3305959 | + | N/A | UCSC |
| LOC112531124P3 | chr31 | 4084266 | 4084514 | + | N/A | UCSC |
| LOC112533556P1 | chr16 | 1595625 | 1598703 | + | N/A | UCSC |
| LOC112533556P2 | chr24 | 6376602 | 6377738 | - | N/A | UCSC |
| LOC423693P1 | chr1 | 165233829 | 165234289 | + | N/A | UCSC |
| LOC426037P1 | chr1 | 16048904 | 16049152 | - | ENSGALG00000054287 | UCSC |
| LOC426037P2 | chr1 | 48071391 | 48071637 | - | ENSGALG00000050350 | UCSC |
| MAU2P1 | chrZ | 65628745 | 65629139 | - | ENSGALG00000052745 | UCSC |
| MEMO1P1 | chr4 | 36536913 | 36537236 | - | N/A | UCSC |
| MIA3P1 | chr4 | 35219978 | 35220943 | - | N/A | UCSC |
| MINOS1P1 | chr8 | 9152469 | 9152717 | + | ENSGALG00000047348 | UCSC |
| MRPL10P1 | chr2 | 129399637 | 129399791 | - | N/A | UCSC |
| MYH1EP1 | chr19 | 58453 | 58667 | - | N/A | UCSC |
| MYO7L2P1 | chr20 | 2594070 | 2594415 | - | N/A | UCSC |
| NAXDP1 | chrZ | 31225774 | 31226008 | - | N/A | UCSC |
| NR1H3P1 | chr27 | 3576482 | 3577520 | + | N/A | UCSC |
| NR2F6P1 | chrZ | 58587431 | 58587614 | - | N/A | UCSC |
| OCRLP1 | chrZ | 72224946 | 72226820 | - | N/A | UCSC |
| PAFAH1B2P1 | chr1 | 188309761 | 188310451 | + | N/A | UCSC |
| PDE12P1 | chrZ | 48553088 | 48553524 | - | N/A | UCSC |
| PDE6DP1 | chr3 | 7306541 | 7306691 | - | N/A | UCSC |
| PIAS2P1 | chrZ | 7575360 | 7577248 | - | ENSGALG00000053307 | UCSC |
| Pou5f3P1 | chr1 | 136263657 | 136263854 | + | N/A | UCSC |
| Pou5f3P2 | chr3 | 71751641 | 71751838 | - | ENSGALG00000038425 | UCSC |
| Pou5f3P3 | chr4 | 9063873 | 9064077 | - | N/A | UCSC |
| Pou5f3P4 | chr23 | 3614504 | 3614701 | + | N/A | UCSC |
| PQLC3P1 | chr2 | 3822967 | 3823329 | + | N/A | UCSC |
| PRKACBP1 | chrZ | 67280183 | 67281110 | - | N/A | UCSC |
| RAB35P1 | chr2 | 57849784 | 57851144 | + | N/A | UCSC |
| RAP2AP1 | chr9 | 23490095 | 23490457 | - | N/A | UCSC |
| RCC1P1 | chr1 | 93533507 | 93533739 | + | N/A | UCSC |
| RHOCP1 | chr3 | 101681660 | 101682038 | + | N/A | UCSC |
| RIT1P1 | chr2 | 54754011 | 54754178 | + | N/A | UCSC |
| RP11-762I7.5P1 | chr2 | 71997144 | 71997866 | - | ENSGALG00000054148 | UCSC |
| SCELP1 | chr3 | 681249 | 681389 | + | N/A | UCSC |
| SIDT2P1 | chr1 | 183719764 | 183721213 | + | N/A | UCSC |
| SIK2P1 | chr5 | 3744016 | 3744391 | - | N/A | UCSC |
| SP1P1 | chr2 | 30162708 | 30162958 | - | N/A | UCSC |
| SP1P2 | chr7 | 16939727 | 16939955 | - | N/A | UCSC |
| SP1P3 | chr7 | 18254534 | 18254801 | - | N/A | UCSC |
| SSBP1 | chr1 | 128268023 | 128268272 | - | N/A | UCSC |
| THOC7P1 | chr1 | 166242495 | 166242838 | - | N/A | UCSC |
| TMEM165P1 | chr3 | 45554270 | 45554544 | - | N/A | UCSC |
| TMPRSS2P1 | chr6 | 19459179 | 19459544 | + | N/A | UCSC |
| TRAIPP1 | chr1 | 157013749 | 157014163 | + | N/A | UCSC |
| TUBA1A1P1 | chrZ | 35006768 | 35007776 | + | N/A | UCSC |
| TUBA8AP1 | chr7 | 22203306 | 22204202 | + | N/A | UCSC |
| TUBA8AP2 | chr33 | 7109795 | 7110709 | - | N/A | UCSC |
| TUBA8BP1 | chr1 | 1839040 | 1839942 | + | N/A | UCSC |
| TUBA8BP2 | chr33 | 7120031 | 7120930 | + | N/A | UCSC |
| TUBD1P1 | chr9 | 16546252 | 16546423 | + | N/A | UCSC |
| UBE2J2P1 | chr1 | 23675281 | 23675658 | - | N/A | UCSC |
| VDAC3P1 | chr1 | 124087404 | 124088307 | + | N/A | UCSC |
| VDAC3P2 | chr3 | 109810391 | 109811440 | + | ENSGALG00000048713 | UCSC |
| WASLP1 | chr1 | 191810775 | 191813739 | - | ENSGALG00000037819 | UCSC |