Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTBP2
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Gallus gallus
Coordinates chr5:32482135-32482465  UCSC
Strand +
Parental Sequence NM_205518.1
Parental seq. overlap 280 bp
Parental seq. overlap (%) 16.2%
Genomic Region Intragenic (ACTC1)
Retrocopy Summary ACTBP2, located on chr5:32482135-32482465, is a retrocopy of the parental gene ACTB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTB
Full Name actin, beta
Also known as Bact|actin
Coordinate chr14:4573374-4577516
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus ACTBP1
Rabbit Oryctolagus cuniculus ACTBP10
Cow Bos taurus ACTG1P1
Sheep Ovis aries ACTG1P1
Dolphin Tursiops truncatus ACTG1P1
Horse Equus caballus ACTBP1
Dog Canis familiaris ACTG1P5
Turkey Meleagris gallopavo ACTBP2
Zebra Finch Taeniopygia guttata ACTBP2
Budgerigar Melopsittacus undulatus LOC101872991P3
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTBP2
taggGTGTTATGGTCGGTATGGGTCAAAAAGATTCCTATGTGGGTGATGAAGCACAGAGCAAAAGAGGTATCCTTACTTTGAAATATCCTATTGAACATGGCATCATCACCAACTGGGACGATATGGAAAAGATCTGGCACCACACTTTCTACAATGAACTCCGTGTGGCCCCTGAGGAGCACCCCACCTTGCTCACAGAAGCACCCTTGAACCCTAAAGCTAATCGTGAAAAGATGACCCAGATAATGTTTGAGACCTTCAATGTACCCGCTATGTATGTGGCAATCCAGGCTGTCCTGTCCCTGTATGCCTCTGGTCGTACCACAGGTA
>NM_205518.1
gccgcctcgcgccgcccgccccggctCTGACTGACCGCGTTACTCCCACAGCCAGCCATGGATGATGATATTGCTGCGCTCGTTGTTGACAATGGCTCCGGTATGTGCAAGGCCGGTTTCGCCGGGGACGATGCCCCCCGTGCTGTGTTCCCATCTATCGTGGGTCGCCCCAGACATCAGGGTGTGATGGTTGGTATGGGCCAGAAAGACAGCTACGTTGGTGATGAAGCCCAGAGCAAAAGAGGTATCCTGACCCTGAAGTACCCCATTGAACACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCACCACACTTTCTACAATGAGCTGAGAGTAGCCCCTGAGGAGCaccctgtgctgctcacagaggcTCCCCTGAACCCCAAAGCCAACAGAGAGAAGATGACACAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTATGTAGCCATCcaggctgtgctgtccctgtaTGCCTCTGGTCGTACCACTGGTATTGTGATGGACTCTGGTGATGGTGTTACCCACACTGTGCCCATCTATGAAGGCTACGCCCTCCCCCACGCCATCCTCCGTCTGGATCTGGCTGGCCGTGACCTGACGGACTACCTCATGAAGATCCTGACAGAGAGAGGCTACAGCTTCACCACCACAGCCGAGAGAGAAATTGTGCGTGACATCAAGGAGAAGCTGTGCTACGTCGCACTGGATTTCGAGCAGGAGATGGCCACAGCTGCCTCTAGCTCTTCCCTGGAGAAGAGCTATGAACTCCCTGATGGTCAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCCGAGGCCCTCTTCCAGCCATCTTTCTTGGGTATGGAGTCCTGTGGTATCCATGAAACTACCTTCAACTCCATCATGAAGTGTGATGTGGATATCCGTAAGGATCTGTATGCCAACACAGTGCTGTCTGGTGGTACCACAATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTGGCACCTAGCACAATGAAAATCAAGATCATTGCCCCACCTGAGCGCAAGTACTCTGTCTGGATTGGAGGCTCTATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGATGAATCCGGACCCTCCATTGTCCACCGCAAATGCTTCTAAACCGGACTGTTACCAACACCCACACCCCTGTGATGAAACAAAACCCATAAATGCGCATAAAACAAGACGAGATTGGCAtggctttatttgttttttcttttggcgCTTGACTCAGGATTAAAAAACTGGAATGGTGAAGGTGTCAGCAGCAGTCTTAAAATGAAACATGTTGGAGCGAACGCCCCCAAAGTTCTACAATGCATCTGAGGACTTTGATTgtacatttgtttcttttttaatagtcATTCCAAATATTGTTATAATGCATTGTTACAGGAAGTTACTCGCCTCTGTGAAGGCAACAGCCCAGCTGGGAGGAGCCGGTACCAATTACTGGTGTTAGATGATAATTGCTTGTCTGTAAATTATGTAACCCAACAAGTGTCTTTTTGTATCTTCcgccttaaaaacaaaacacacttgATCCTTTTTGGTTTGTCAAGCAAGCGGGCTGTGTTCCCCAGTGATAGATGTGAATGAAGGCTTTACAGTCCCCCACAGTCTAGGAGTAAAGTGCCAGTAtgtgggggagggagggg

Publications

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