Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name H2az1
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name H2A.Z variant histone 1
Also known as H2A.Z|H2A.Z1|H2a.z-1|H2afz
Coordinate chr3:137570248-137572683
Strand +
Gene summary Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene encodes a replication-independent member of the histone H2A family that is distinct from other members of the family. Studies in mice have shown that this particular histone is required for embryonic development and indicate that lack of functional histone H2A leads to embryonic lethality. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2015]

Retrocopy(s) from H2az1

Retroname Coord Strand Genomic Region ENSG
H2az1P7 chr12:83666981-83667947 - Intragenic
ENSMUSG00000113431 UCSC
H2az1P9 chr16:83362578-83363047 + Intergenic
ENSMUSG00000116533 UCSC
H2az1P1 chr2:111571044-111571570 + Intergenic
ENSMUSG00000084134 UCSC
H2az1P3 chr4:135724890-135725235 + Intergenic
ENSMUSG00000083852 UCSC
H2az1P4 chr6:116150592-116151458 + Intragenic
Intragenic
ENSMUSG00000101878 UCSC
H2az1P6 chr7:73355544-73356308 - Intergenic
ENSMUSG00000108687 UCSC
H2az1P5 chr7:130368572-130369529 + Intragenic
ENSMUSG00000109104 UCSC
H2az1P10 chrX:22070920-22071869 - Intergenic
ENSMUSG00000082175 UCSC
H2az1P11 chrX:66707308-66707489 + Intergenic
ENSMUSG00000083010 UCSC
H2az1P2 chr2:154336670-154336959 - Intragenic
Intragenic
N/A UCSC
H2az1P8 chr14:108909820-108910359 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_016750.3
GTCCCGAGGGCGGGAGGCAACCATTGGTGGGCCGAACCGGCCGAGTTCCCGGATGAGGGAACATTCTGCAGTATAAAGGGCGCGAGGAAGGCGGGAGACGGCGCAGTTTGAATCGCGGTCCGACGGAGGAGTGGGCGCTGGGATCTCGCTGAGCGTCCGCCTGGCCTCGTCTCTTCCTCGCTCGTCGGAGCTTCAGCACGGTCCGAGATGGCTGGCGGTAAGGCTGGAAAGGACTCCGGAAAGGCCAAGACAAAGGCGGTTTCCCGCTCGCAGCGAGCCGGCTTGCAGTTCCCTGTGGGCCGTATTCATCGACACCTGAAATCTAGGACAACCAGCCACGGACGTGTGGGCGCGACCGCCGCTGTGTACAGCGCAGCCATCCTGGAGTACCTCACCGCAGAGGTACTTGAGTTGGCAGGAAATGCGTCAAAAGACTTAAAGGTAAAGCGTATCACCCCTCGTCACTTGCAGCTTGCTATACGTGGAGATGAAGAATTGGATTCTCTGATCAAAGCTACCATTGCTGGTGGTGGTGTCATCCCACACATCCACAAATCGCTGATCGGGAAGAAAGGACAACAGAAGACTGTTTAAGGATGCCTGGATTCCTTATTATCTCAGGACTCTAAATATTCCTAACAGCTGTCCAGTGTTGGTGATTCCAGTGGACTGTATCTCTGTGAAAAACACAATTTTGCCTTTTTGTAATTCTATTTGAGCAAGTTGGAGGCTTAATTAGCCTTCCAACCAACCAAATTTCTGCATTCGAGTCTTAACCATATTTAAGTGTTACTGTGGCTTCAAAGAAGCTATTGATTCTGAAGTAGTGGGTTTTGATTGAGTTgactgtttttaaaaaactgtttggATTTTAATTGTGATGCAGAAGTTATAGTAACAAGCATTTGGTTTTGTACAGACATTGTTTCCACTCTGGTGGATAAGCTCAATAAAGGTCATATCCCAAACTAGCTTTAAACTTGCTTAATAATCGGGACTTACCTTAGATCTCACTCAGCAACAAGTACATTCTCTGCTTACTAATTAAACAGTGCATCTGTAGTCATAA