Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RPL27A
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein L27a
Also known as L27A
Coordinate chr11:8682792-8689872
Strand +
Gene summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L15P family of ribosomal proteins. It is located in the cytoplasm. Variable expression of this gene in colorectal cancers compared to adjacent normal tissues has been observed, although no correlation between the level of expression and the severity of the disease has been found. As is typical for genes encoding ribosomal proteins, multiple processed pseudogenes derived from this gene are dispersed through the genome. [provided by RefSeq, Jul 2008]

Retrocopy(s) from RPL27A

Retroname Coord Strand Genomic Region ENSG
RPL27AP9 chr1:160020331-160020786 + Intergenic
ENSG00000237409 UCSC
RPL27AP8 chr13:47766606-47767098 - Intergenic
ENSG00000229423 UCSC
RPL27AP12 chr18:9734787-9735605 - Intragenic
ENSG00000266891 UCSC
RPL27AP chr20:43652503-43653332 + Intergenic
ENSG00000215467 UCSC
RPL27AP13 chr20:59878189-59878338 - Intragenic
N/A UCSC
RPL27AP4 chr2:106304861-106305172 + Intergenic
ENSG00000233939 UCSC
RPL27AP3 chr2:180938878-180939221 - Intergenic
ENSG00000236667 UCSC
RPL27AP5 chr5:74990147-74990656 - Intergenic
ENSG00000182383 UCSC
RPL27AP11 chr6:153282248-153282754 - Intergenic
ENSG00000218426 UCSC
RPL27AP10 chr6:47752769-47753236 - Intergenic
ENSG00000216616 UCSC

Expression

Transcript Sequences

>NM_000990.5
CTTTTTCGTCTGGGCTGCCAACATGCCATCCAGACTGAGGAAGACCCGGAAACTTAGGGGCCACGTGAGCCACGGCCACGGCCGCATAGGCAAGCACCGGAAGCACCCCGGCGGCCGCGGTAATGCTGGTGGTCTGCATCACCACCGGATCAACTTCGACAAATACCACCCAGGCTACTTTGGGAAAGTTGGTATGAAGCATTACCACTTAAAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTTGACAAATTGTGGACTTTGGTCAGTGAACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTGCTCCCATCATTGATGTGGTGCGATCGGGCTACTACAAAGTTCTGGGAAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAATTCTTCAGCAGAAGAGCTGAGGAGAAGATTAAGAGTGTTGGGGGGGCCTGTGTCCTGGTGGCTTGAAGCCACATGGAGGGAGTTTCATTAAATGCTAACTACTTTTTCCTTGTGGTGTGAGTGTAGGTTCTTCAGTGGCACCTCTACATCCTGTGTGCATTGGGAGCCCAGGTTCTAGTACTTAGGGTATGAAGACATGGGGTCCTCTCCTGACTTCCCTCAAATATATGGTAAACGTAAGACCAACACAGACGTTGGCCAGTTAAACATTTCTGTTTATAAAGTCAGAATAATACCTGTTGATCACTGAAAGGCCTGCATGTATTGTACTCTGAATTTTACAGTGAATGAGAGAATGTACCCTAATTGTTCAACAGGGCTCAAAAGGAAAGATTCCATTTTGATGGGTCACATTCTAAAGAGGGGCAGTGTGATAGGAATGAGATGGTCCTTTAGGACTTAAGTTCTCAGCCCAAGGTTTTTCCACGTGGCCCCCTCATCttttttttttttttaaacggagtctctcttgccaggctggagtgcagtggcacgatctcggctcactgcagcctccgcctcccaggttaagcgattctcctgcctcagcttcctgactaactgggattacaggcgcccaccaccatgcccagctaatttttgtattttcagtagagatggggtttcaccatgttggccatgctggtctctaactcctaacctcaagtgatctgcccacatcggcctccaaaagttctgggattatagtgtgagccactgcgcccggccATGGCTCCTTAATCTTGatccaaattattgttacatccagaatgtgatgaatcaaaatctcgagatgggggtccagcaatctgaaatttcagtatgccAGGGCTTTTCTGTATGTCAAAGTGGGTTTGAAATAGTTAATTTTTCTTCTAGTCTGAAATGTATCGGGAAAATTTGGAAATCCTGAAGGCTGGAAATTGAAATAAGTTTTTCTAGGATTTGTGTCTCTTGCTATTGGAAAACTGATGGTGACCAATTCATGTTTACAAATAAGATCCTCATAGATCTCGGTAAATTATAATTTGCTACAGTTTTATGGTTCTTCCTGTGATTTTGAGCTTTTTTTGACCCAAAATAATACAGTCTAAAACTATAGACAAATAAGATGGCACTTAGACTCCTGGGTTTTAGTTAGTGGAGGTTTCCTTAGTGCACTGTGGGGTCATAATAAGCCGAGAACCATGGCTGTCTATGGGACACATCTGTCAGGACAACCTTTAGAGGATGTTGGGGATCAAATAGAAGGCACAGAGAAGCACTGAATTGGCTTACATAAGAATAGGCTAGAATTACAAGTAGTGAAACCTCGATTCAGCTGGACAATTTTAAACAAATGTATCATTTGGCTTGTATCTTCTGTTGTGCTGGAGAAGTTAGAAATAAGGGCTCtccagaccagcctgaccaacctggagaaaccttgtctctactaaatacacaaaattagccaggcgtggtggcacatgcctgtaatcccagctactttggaggctgagccaggagaatctccaggaggcggaggttgctgtgagccgagatcgtgccattgcactccagcttgggcaacaagagtgaaactctgtcCACCCCCCCCAAAAAAAGTAAGGGCTCTCCATTAGGGCCCATAGAGGACTTGTAATATGGAACCTGAATCCAAGGATCCCACAATAAGTGGTCAGTAGTTCATGATGAATTAAAAGACTCAATATTTGGTCTTCACCCAATACCTGTGTGActtttagtcctaatttcctcatctttaaaatttcagtgaaagtgcctacctgaggattgtgtagattaaaatggaaaccgtgcacttaattttttgttttgttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcagatcactgcaagctccgcctcctaggttcagaccattctcctgcctcagcttcccaagtagctgggactacaggcgcccgccactgcgcccggctaattttttgcatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgatctgcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccCAGGCACTTAATTTTTGTGTTTGACTTAGTAACTTAAGTGCAAACTATTACGGGAGCAGATGGAGTCAATTGGCCTTCATGTGATTGTCAGTGGGAAATTGGTCCAAGCAGAGGGAATACTGGTTCAGGAAACTGGTTTGGGAAGGTTAGGCAAACGGGAAGTGCTATGGTGGAGAGAAAGATTACTCTGGCCGGGCTGTAAAGGACGGCTACAATGGGAGGCTGAAGGCAGAACCAAGAAAATGGGAGTGAGTATGGAAAAGGTACGATTCAGACGGCATAATGGACGGGACTTGGAGACTGAATTGTAGTGGGCCGACCACAAAATGATAAGGCATGGAAGGAAGTAGAGTTTGGGGGGAAGGATCCCTAGTCCCTTAATGGCTACCTTCTTCCCCAGGAGTTGTTAGGCCATCCGATCCCCTGGCCTGGGAAAGAAACACTGATTTCGTTGCTGGCTTGTTCACTCACCAGAAGCTACAGCTACTAACAGTTCTAAAAACTGTTTCATGTGATGAGGAACAGACGAAAATAGTTTTGAGCCCTAAGTCCGCCGATTCCAGTGCTTTCTTGAACCCGCATTTACTAAAATATTTTCATGACTGCCAAGCTTTGAATAGCCTGCTGTGTTCATGGAGGCTCATACTGGCGATCTCTAGTGGCTGGCTAAAGCTTGAATTGCAAAAGATCTAATTTCTGGTCTAATGTAtatatgccttaaatatagttgcgttcaaacgtgggagctgcaggtgcaacttgattttatgacaaatggctgccacataatttgcacaagcagtgctcgtcaagggcagctaaatcaggcgagctttcaatcaaaataaatGTACTACTAAACCCTACTTAGCGGCTAACTAGCCCAAGAGCAGACAGCCCACGGACGGACTGCAAGTCGGAAGCGCGGGCGGAAGCTGTGCAGCGCCCACCTGGTGGCTCCATCGGCCGCGTTCATCAGTCAGCACGACCCGACCTCAGTGGCGTCCTCACAACACAGACCGGACCTTGGGTCTTACCCCGGCACCTGAGAACCACTTCCGGTGAGTAGCTTCTACTTCCGGAGACGATGACTCCCCCGCGTCCCAGACCGGAAGAAGCCCGGCGGAGACCGGCCTCGCTCGGCCACTTCCGGCAAGGGCGGAGCCGGCCAGTGGTGCGCGAGCGCAGATAACTCCCCTGGAGAGGCGGGATGTTCAACTCCACCCCTGGTCCTTGGGCGGCCGTGGGTCCCCTTCGAAGCGGAGGAATGGCCAACCTCGCCGCACTTCGAGCCCCTTTAGGGTGCGTTTAAGAACAGTGGGCGTGGCCTTTACGTAAATCTTCGAGATGGGAACCTCCAGAATTTGTCTCAATTGTCTAAAAGGTAATGAGCGTCAGCGACATTCAAGGGCACTTTGGGCTAAAAAAGAAAGTGCTTGTACACGGATGGAAATATTCTAGAAGAACATAAAAGGAATTTCCTCTTAGGAGGTTAGGGAAATGAGCACGAAGTATGTTTTGGTGCAGTTTTTTGTTCAACCCAATGCGTATTTTCATATTGAGAGGCAATATAAATGGAGCGAAAGTATCTTGAGAAAAAAAAAAAAACTACCAGAACTTGCCGTTGCTGAAAAGTAATATTTTCTCTTTCGAGAGTTTTCATGGCCTTTTAAATTACACCCCCACCTCCACAGGCAAATAAATTTGTTTTGGAATGCATACCACATCATCTGGCTCTAGAAACGTATTTTGTGTAGCTCCCCTAGCAAGAATATAGGTTAAAGCGTAAATTTAATTCCTGGCTCTATTTTACATCCCAATTTTTATTTTCCTCTCATTCCCACTTTACGTTGTTTCAAATAACCTAGTTTGTGTATCCCTGTAAGTCATTTTGGTATAAAGTAGGTTATAAGTGTACATGCGAAAAGATGTTTTTAACAAAAATGTAACTGA