Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100975318P38
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr14:34211700-34211937  UCSC
Strand +
Parental Sequence XM_024928695.2
Parental seq. overlap 188 bp
Parental seq. overlap (%) 22.8%
Genomic Region Intergenic
Retrocopy Summary LOC100975318P38, located on chr14:34211700-34211937, is a retrocopy of the parental gene LOC100975318. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100975318
Full Name N/A
Also known as RPS3A
Coordinate chr4:143438184-143443266
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC461536P39
Orangutan Pongo abelii RPS3AP31
Gibbon Nomascus leucogenys RPS3AP1
Green monkey Chlorocebus sabaeus LOC103236378P34
Crab-eating macaque Macaca fascicularis RPS3AP17
Baboon Papio anubis LOC101003493P18
Marmoset Callithrix jacchus RPS3AP39
Mouse lemur Microcebus murinus RPS3AP3
Horse Equus caballus RPS3AP8
Dog Canis familiaris RPS3AP9
Panda Ailuropoda melanoleuca RPS3AP14
Cat Felis catus RPS3AP10
Pale spear-nosed bat Phyllostomus discolor RPS3AP5
Greater horseshoe bat Rhinolophus ferrumequinum RPS3AP23
Human Homo sapiens Without Homology
Gorilla Gorilla gorilla Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100975318P38
TTTTGAAGTGAGCCTTGTTGATCTACAGAACAATGAGGTTGCATTTAGAAAATTCAAGTTCATTACTGAGGGCATTTAGGGTGAAGATTGCCTGACCAACTTCCGTGGCAGGGATTTCACCCACGAAAAAATGTGCTCCATGGTTAAAAAGTGTCAGACCAGGTATGAAGTTTACGCTAATGTCAGAGCTACTGATGGTTATTTGCTTCATCTCTTTTGTGTTGGTTTTACT
>XM_024928695.2
GGCAAAGGTCACGTAGACGGCGCGCCCCGCCCCCGTACGCCTAAGTTCTCGCGCGACTCCCATTTCCGCCCTTTTGGCTCTCTGACCAGCACCATGGCGGTTGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAAGAAAGATTGGTATGATGTGAAAGCACCTGCTATGTTCAATATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAGGAACCAAAATTGCATCTGATGGTCTCAAGGGTCGTGTCTTTGAAGTGAGTCTTGCTGATTTGCAGAATGATGAAGTTGCATTTAGAAAATTCAAGCTGATTACTGAAGATGTTCAGGGTAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCGTGACAAAATGTGTTCCATGGTCAAAAAATGGCAGACAATGATTGAAGCTCACGTTGATGTCAAGACTACCGATGGTTACTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAGGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAAATTTGGGAAAGCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAAAGTTCAGACTTCAAATAGTGGCAAATAAAAAGTGCTATTTGTGA

Publications

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