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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100979972P4
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr11:113662493-113662789  UCSC
Strand +
Parental Sequence XM_003822789.3
Parental seq. overlap 245 bp
Parental seq. overlap (%) 38.4%
Genomic Region Intergenic
Retrocopy Summary LOC100979972P4, located on chr11:113662493-113662789, is a retrocopy of the parental gene LOC100979972. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100979972
Full Name N/A
Also known as COX7C
Coordinate chr5:28763336-28766369
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens COX7CP4
Chimpanzee Pan troglodytes COX7CP5
Gorilla Gorilla gorilla LOC101133649P5
Orangutan Pongo abelii COX7CP4
Gibbon Nomascus leucogenys LOC100579903P3
Rhesus Macaca mulatta LOC106998836P3
Baboon Papio anubis LOC101014053P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC115896572P2
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100979972P4
TGGTTGACAACATCTGTGGTCTGCAGGAGCCACTATGCGGAGGGCCCAGGGAAGAATTTGCCATTTTCAATGAAAAACACGTGGCAGTTACTAATTATGATGACTTTGTACTGGGATCGGGATCTGCGGCACCCTTCTTTAAAGTAAAACACCAACTGCTTAAGAAATAAGAATGTTTTAGTTTATCCATTGAACAGACATGAAGAGTGTTTCAAGAGTTGCCCTTTGAAAAATGGATCAAACTCTTGAACTCATGTAGCATACTAGATATGTTTGTGAATAAACTCATGACATGAA
>XM_003822789.3
ATCTTTCTTTTCAGTCCTTGCGCACCGGGGAACAAGGTCGTGAAAAAAAAGGTCTTGGTGAGGTGCCGCCATTTCATCTGTCCTCGTTCTCTGCGCCTTTCGCAGAGCTTCCAGCATCGGTATGTTGGGCCAGAGCATCCGGAGGTTCACAACCTCTGTGGTCCGTAGGAGCCACTATGAGGAGGGCCCTGGGAAGAATTTGCCATTTTCAGTGGAAAACAAGTGGTCGTTACTAGCTAAGATGTGTTTGTACTTTGGATCTGCATTTGCTACACCCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGATGTTTCAGTTCCTCCATTTAACAGATATGAAGAGCATTTTAAGAGGTGCAACCTCTGGAAGTGGATCAAACTAGAACTCATATGCCATACTAGATATGTTTGTCAATAAACTTATGACGTGAATGCTTAATGCCTCTTTTTTGAAATAGGGAATGTAATAATTGGCCATTTGCCTACTTTATTATTTGGGTAACATTCCAGTATTACTCTCTGTGATTTAGCTTATTTAATGGTGTTAAACTGAGGTTATATTAAATTTTTGATTCCCAGGTCAGGATTTTGTTGGTAATTTATATAATAAAAGGGAAATACAAATCGA

Publications

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