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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100982477P16
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr2B). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr9:63080712-63081048  UCSC
Strand +
Parental Sequence XM_008950644.2
Parental seq. overlap 300 bp
Parental seq. overlap (%) 46.9%
Genomic Region Intergenic
Retrocopy Summary LOC100982477P16, located on chr9:63080712-63081048, is a retrocopy of the parental gene LOC100982477. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100982477
Full Name N/A
Also known as MOB4
Coordinate chr2B:84743351-84794934
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSPE1P22
Chimpanzee Pan troglodytes HSPE1P16
Gorilla Gorilla gorilla LOC101151505P15
Orangutan Pongo abelii HSPE1P11
Gibbon Nomascus leucogenys LOC100605912P1
Green monkey Chlorocebus sabaeus LOC103217585P15
Crab-eating macaque Macaca fascicularis LOC102147033P22
Rhesus Macaca mulatta HSPE1P18
Baboon Papio anubis LOC101019904P18
Golden snub-nosed monkey Rhinopithecus roxellana LOC104676747P22
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100982477P16
ATATTGGTTGAAAGGAGTGCAGCAGAAACTGTAACCAAAGGAGACATTAGGCTTCCAGAAAAATCTAAAGGAAAAGTATTGCAAGCAATAGTAGTGGCTGCTGGATGAGGCTATAAGGGAAAAGGTGGAGAGATTCAACCAGTTAGCATGAAAGTCAAAAATAAATTTCCTCCAGAATATGGAGACACCAAAATAGTTCTAGATGACAAGGATTGTATCTTATTAAGAGATGGCAGACATTCTTGAAAAGTATGTAGACTGAAACAAATCACTATTGAAATGGCATCAACATGAAGCTGCCCACTGAAATTCTGTAATCTTTCATCATGCAAATAAT
>XM_008950644.2
aggggcgagggggctagcggcgacggctggggcgagCGCGCCTGCGCGCTGGGTGATTTTTTCACGTGTCGCCAGGGCCGGACTGCGAGTCTCCTTGCGGCGCTACACTAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTAATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAACCAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTAAAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAAGTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGAAATAAGTCACTATTGAAATGGCATCAACATGAAGCTGCCCATTCCACTGAAGTTCTGAAATCTTTCATCATGTAAATAATTTCCATATTTCTCTTTTATAATAAACTAATGATAACTAATGACATCCAGTGTCTCCAAAATTGTTTCCTTGTACTGATATAAACATTTCCAAATAAAAGTATGTAAA

Publications

PMID - Link Title