Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100982477P17
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr2B). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr11:102533235-102534391  UCSC
Strand -
Parental Sequence XM_034954739.1
Parental seq. overlap 740 bp
Parental seq. overlap (%) 27%
Genomic Region Intragenic (ELMOD1)
Retrocopy Summary LOC100982477P17, located on chr11:102533235-102534391, is a retrocopy of the parental gene LOC100982477. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100982477
Full Name N/A
Also known as MOB4
Coordinate chr2B:84743351-84794934
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MOB4P3
Chimpanzee Pan troglodytes HSPE1P17
Gorilla Gorilla gorilla LOC101151505P19
Orangutan Pongo abelii MOB4P2
Gibbon Nomascus leucogenys LOC100605912P18
Green monkey Chlorocebus sabaeus LOC103217585P3
Crab-eating macaque Macaca fascicularis LOC102147033P19
Rhesus Macaca mulatta MOB4P3
Baboon Papio anubis LOC101019904P15
Golden snub-nosed monkey Rhinopithecus roxellana LOC104676747P18
Marmoset Callithrix jacchus LOC100385103P23
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100982477P17
TGGCCTGACGATTCTTTTGATGAAATGGACAGTACGCTAGCTGTTCAGCAGTATACGCAACAGAACATAAGAGTCAAGATTGCTCCAATACTGACAAAAATCTTGAGCCACCTGAAGGCCAAGATGCAGGTATATGGAAGTATGAACATTTAAGGCAATTCTGCCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGACTGAATGCCATCCAGATACTTGTACTCAAATGACAGCAACTGAACAATGGATTTTTCTTTGTGCGGCTCATAAAACTCCAAGAGTGTTCTACTACAGACTATACTAGACACAGACTTGATGGTGCTGTGTCTTCTGAAAAGCAGTAACTATTTCCCCAGCAGGGTTAGTATAAAGGAATCATCTATAGCAAAACTTGGACCAGCATACTTTAAGATTTCCAGAATATTTTCACATGCtACATGCTTCTTTTTATTACTCCAGATATTGGATGAATATGAAAACGAAACATTTTTGTGTCATTTTGTATCACTAAGTTTGTGATAAAAGAAAATTTGATGTCCAAGGATAACCTGATTATACCAACTTTAGAAGAGGAAGTTCAGAATTCAGTTTCTGGAGAAAGTAGCATGAAGGGGAATCACAAAGAAAAATATACCGATCACATGATTAACATTAATTATGTGTGGTATGTATCATTTTAGACCCATCAATCATGTATCCGTATTCTAGCTTCTTCGTTTAGTATAGTTGTCTGCTGTGTTTGCCTTTTATAATGGGAAAAATTTTTAAAGTTATTCATAAGCTGTATATTCACCAGTGTGGCACTCATTATTTTTAAATAAGATTAGTATTg
>XM_034954739.1
AGGCGGCAGGCGGGCGGGCTGGGGCACTGGTGCCCGGCCTGCTCTTCCGGAGCTGCAGCCCCTCAATTTGGCTGAGGCGGTGGCGGCCGCCGTGAGGCCTGCGGAGCTCCGACCCAGGGGATTTCTATAATTGGCCTGATGAATCCTTTGATGAAATGGACAGTACACTAGCTGTTCAACAGTATATTCAACAGAACATAAGAGCAGATTGCTCCAATATTGACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTGTGGAAGTATGAACATTTAAGGCAGTTCTGCCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACTTGCACTCAAATGACAGCAACTGAACAATGGATTTTTCTTTGTGCAGCTCATAAAACTCCAAAAGAGTGTCCTGCTATAGACTATACTAGACACACACTTGATGGTGCTGCATGTCTTCTGAATAGCAATAAATATTTTCCCAGCAGGGTTAGCATAAAGGAATCATCTGTAGCGAAACTAGGATCAGTATGCCGTAGGATTTACAGAATATTTTCACATGCTTATTTTCATCATCGGCAGATATTTGATGAATATGAAAATGAAACATTTTTGTGTCATCGGTTTACTAAGTTTGTGATGAAATACAATTTGATGTCCAAGGATAACCTGATTGTACCAATTTTAGAAGAGGAAGTACAGAATTCAGTTTCTGGGGAAAGTGAAGCATGAAGGGAATCATATGGAAAAATGTACTGATCATATAATTAACATTATGTACTGTATATATCATTTTAGACACATCAATCATGTATCCATATTATAGCTTCTTTGTTTAGTATAGGTTTTTGTATGCTGGGTTTGCCTTTTAAAATGGGAAATACTTTTTAAGTTATTCATAAGCTGTATATTCACCAGTGTGGCACTCATGGTTTTTAAATAAGATTAGTATTATCTGTTTATAATGCCTGTTAATAAAAGAATTTACAGTTTGGTAAAATTGCTGCTAAACAATCATTGGATCACAATCCTCATCAGACAAACCCATCTGTAAAAAAAATGAGGGAGAGCTTGAGGTTTCACACAAGCCATTTACTAAAGAGGTAGAAATGTTTTCCATTGGTTTTACCTTGAGTTTAGATATCCTAAAAAATTCTGTAGTACGTAGTTTTGTCTTACCTGTTAACTTTCCCCAATTGAGATAAAAGTGTTTTAAAATTCTGTTTATAGTTTTTGATATCCATATATAATTATGTGTATATCTAAATACAAATGCAAATGAAGCATTAGTAATACTTAAATAATTTTACTGTGCTACATAAAGTATAACATACTTGGAAAGGATTTACCTTTCTGCAACAACGGACTGGTACATACAGGATGATCACAATGGTAAGGCACATAAATTATTTTCCCACTGGAAACCTGCCCTGTCCACCCCTTCTCATTTCCCTTAACCTTAACTTCAAACTACTTTAGCTGAGAAGCTTTTCACCAGACTGAGTTAGTGGTGGCTTATACCTATTTATATTTGTGTTAATTGCTTACAGATTATACCTCATATTAGCAATTACATTACACTACAAGAAAATGTATTTGCATAGGCTCTTGCTTATCTTTGTTTTGCAAAATTGTTCTACTTGGAAAACAGTCCTTAAAATAGTTTGACTCTTCCTGTTAGTAATATTAATCTTTGATTTAACCAGCTAGGCAGCATTAAATAGAATTGAAGAAATACCATAGTATTTATTTTACACCCCCTCTCCCACGAAGTTTATGTTTGGATTACATGCACGTGTGAGATTATTTGCAATAATTCATAGGTTCCAAGGGTGTTGATGAATAGTCATACATTTTTTTGGACTTTGTTATAATTCATTGTGGTAAGAATGATTGAAATGCAGATTTAACAATCTTATAATCTATTGAATGCCATTTTTGATAAAGCACTGGAGGTCTTATTGCCAAACTGATTGTAATGAGGCAGTAAGGGTGAAAACATTGTACATGTTGTGAAGAAAGTATTTAAATCCAACTTTTGAACAGATTTAACAAACATGAGGAACTTCTTTTTTATTTAGAAGGATAATTTTGAAATGAAGATGAAAATGTATTCATCTTAATTGTTTTTTCAAATTTAAGGGAATAATTTATACCATCTTTTGAGACAAGAATGTACAGCAAAAATAAGGGGAACAGTAGCATACTGAGAGTGTGTGTATATATAGTGTATGCCTTTCCAAGCTTGCCAGTCTTTTTGGCTTTGAACACGGCCCACCAGCTACAGTCATTACTGTTCCCCAACCCACAACTATCTTTTAAAAAGTCTTAGTTCACAGTGAAAGGAATGATGACTTTGAAATTATGGATTTATATTAATGGCACTATAAACCAATGGTAATGATAATTTTTAAACTTGCTAAATATTGAGAGACTAAACTACTAAGTTAATAAATTATATATAGCAGTGTAGCTGTTCTCTCTAGATGGTGTCTCACAATGGATTTCTGTTGCTTGACTATTTTCTTAGTGAATATTTATACTAAGGTAGTGACTGAGATTTGGTGATCTGGCTGAGTATTTTGAAACACATTTTGAATAATATGGCTTAGTGTTAACGGGGACTTAAATATGATTTTTTTTTCTTACTCATTTCACCTTCCCTGTACTGTATGTTTGGAATTGATCATAAAACATCTCCAAAAGAAAATAA

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