Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100982516P6
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr6:119632599-119633203  UCSC
Strand -
Parental Sequence XM_008955261.4
Parental seq. overlap 481 bp
Parental seq. overlap (%) 28.4%
Genomic Region Intergenic
Retrocopy Summary LOC100982516P6, located on chr6:119632599-119633203, is a retrocopy of the parental gene LOC100982516. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100982516
Full Name N/A
Also known as -
Coordinate chr9:36152010-36154502
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGB3P18
Chimpanzee Pan troglodytes LOC747998P5
Gorilla Gorilla gorilla LOC115935782P3
Orangutan Pongo abelii HMGB3P11
Gibbon Nomascus leucogenys HMGB3P6
Green monkey Chlorocebus sabaeus LOC103219190P8
Crab-eating macaque Macaca fascicularis HMGB3P7
Rhesus Macaca mulatta HMGB3P7
Baboon Papio anubis HMGB3P7
Golden snub-nosed monkey Rhinopithecus roxellana HMGB3P10
Marmoset Callithrix jacchus HMGB3P12
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100982516P6
GAACAATACAGTCAGGATGGATAAAGTTGACCCGAAGAAACCAAAGGGCAAGATGTCTGCCTATGCCTTCTTTGTGCAGATGGGCAGAGAAGAACATAAAAAGAAAAATCTAGAGTTCCCTATTAATTTTACAGAATTTTCCAAGAATTGCTCTGAGAGGTGGAAGACAATGTCTGGGAAAGAGAAGTCTAAATTTGACGAAATGGCGAAGGCAGATAAAGTACACTATGATTGGGAGATGAAGAATTAAGAACCAGCTAAGGGAGGCAAGAAGAAGAACCCTAACGCCCCCAAAAGGCCACCATCTGGATTCTTCCTTTTCTATTCAGAATTCTGCCACAAGATCAAATCCACAAACCCTGACATCTCTATTGGAGACGTGTCAAAAAGCTGGGTGAGATGTGGAATAACTTAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGTGGCACAGCTGAAGAAGTATGAGAAGGATGTTGCTGACTGTAAGTCTAAAGGAAAGTTTGATGGCCCAAAGGGTTCCACTAAAGTTGCCTGGAAAAaT
>XM_008955261.4
ggaggaggttgcagtgagccaagatcgtgctactgcactccagcctgggtgacacagcaagactccgtctcaaaaaaaaaaaaaaaaaaaaTTAGCCAGGCATGGAGGTGGCTCTCATGGAGGCAGCTAGCATGAGGCTAGGGAGCGCCGAGCCACGCGTCATGCCCTGCGCTACCCAGACTAGTGAACAATACAGTCAGGATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTCTGTGCAGACATGCTGCAAAGAACATAAGAAGAAAAACCCAGAAGTCCCTGTCAATTTTGCAGAATTTTCCAAGAAATGCTCTGGGAGGTGGAAGACAATGTCCAGGAAAGAGAAATTTAAATTTGGTGAAATGGCAAAGGCGGATGAAATGTGCTATGATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCCCCCAAAAGGCCACCATCTGGATTCTTCCTGTTCTGTTCAGAATTCCGCCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTGGCAAAAAAGTTGGGTGAGATGTGGAATAACTTAAATGACAGTGAAAAGCAGCCTTACGTCACTAAGGCAGAAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGTTGACTGTAAGTTGAAAGGAAAGTTTTATGGCGCAAAGCGTCCTGCTAAAGTTGCCCGGAAAAaggtggaagaggaagatgaagaagacgaggaggaagaagagaaggaggaggacgaggaggatgaACAAAGAAACTGTTTATCTGTCTCCTTGTGAATACTTAGAGTAGGGGAGCGCCGTAACTGACACATCTCTTATTTAATGTCTGTTGCCCTCATTAGGTTTAATTACAAAATTTGATCACCATCGTATTGTAGTCTCTCAAAGTGCTCTAGAAATTGTCAGTGGTTTACACGAAGTGGCCATGGGTGTCTGGAGCACCCTGAAACTGCACCAAAGTTGTACATATTTCCAAACATTTTTAAAATGAAAAGGCATTCTCGTGTTCTCCTCACTCTGTGCACTTTGCCGTTGGTGTGACAAGGCATTTAAAGATGTTTCTGGCATTTTCTTTTTATTTGTCAGGTGGTGTTAACTATATGGTTATTGGCTAGAAATCCTGAGTTATCAACTGTATATCTCTATAGTTTGTAAAAAGAACAAAACAACCGAGACAAACTCTTGATGCTCCCTGCTCGGCGTTGAGGCTGTGGGGAAGATGCCTTTTGGAGGGCCCGTAGCTCAGGGCGTGCACTGTGAGGCTGGACCTGTTGACTATGCAGTGGGCATCCATTTAGCTTTAGGTCGTCTTGTTTCTCTATATAGTGACATAGCATTCTGCTGCCATCTTAGTTGTGGACAAAGCGGGGTCAGCTGGCATGAGAAGtttttattgtgtgttttttttttttttGAGTAAAGTGGGGTAGTTTTTAAACAAACTGTAGAACTCTTCATTGTCAGCAAAGTGAAGAGCCACGGCATCAATGAAAGTTCAAGAACCTCCTGTACTTAAACACGATTTGCAACATTTTTTTTGTATGTTTAGAATGCTGAAATGTTTTTGAAGTTAAATAAACAGTATTACATTaaaaaaaaaaaatagccaggcatggtggtgggtgtctgtaatcccag

Publications

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