Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100991754P3
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr12:67626752-67627344  UCSC
Strand +
Parental Sequence XM_003821812.4
Parental seq. overlap 560 bp
Parental seq. overlap (%) 44.4%
Genomic Region Intergenic
Retrocopy Summary LOC100991754P3, located on chr12:67626752-67627344, is a retrocopy of the parental gene LOC100991754. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100991754
Full Name N/A
Also known as C4H4orf27
Coordinate chr4:161949343-161977887
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HPF1P3
Gorilla Gorilla gorilla LOC101148582P1
Gibbon Nomascus leucogenys LOC100587678P3
Green monkey Chlorocebus sabaeus C7H4orf27P3
Crab-eating macaque Macaca fascicularis C5H4orf27P4
Rhesus Macaca mulatta C5H4orf27P4
Baboon Papio anubis LOC101023020P4
Golden snub-nosed monkey Rhinopithecus roxellana LOC104662874P4
Human Homo sapiens Without Homology
Orangutan Pongo abelii Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100991754P3
GTAACAGATAAAAAGAAAACTAATCTCTTGAAAAACATAGATGAAAAACTTACAAAAGCAGCTGGAGAACTGGGGGTACTCACTGGAACAGAGAACCATGAAGATGAAACAGAGAGATAAGAAAGTTGTGTCAAAGACCTTTCATGGTGCTTTGTTGTTCCAGTAGATAAAAATGATGTTAGGTACAGAGAGCTCCCTGAAACAGATGCTGACCTCAAGAGAATTTGCAAGACAATAGTTGAGGCTGAAAGCTTTTGCTCCCATTCAGGAAATGATGACTTTTGTGCAGTTTGCTAATGATGAATGTGATTATGGGATGGGGCTTGAGTTGGGAATGGACCTCTTTTGCTATGGCTCACATTATTTTCATAAAGTTGCTGGCCAGTTTTTACCTCTTACCTATAATCTATTGAAGAGGAATCTGTTTGCAGAAATTATTGAGGATCATCTGGCAAACAGAAGTAAAGAGAACATAGACCAACTTGCTGCATGAGTAAGGTGACTTTGGTGTACAATATTTCAAAGGGTTAGTATTAAACTTGTGATTTTTGTTTTGTTTTTAAGGAATGTAAAAAATAAACGTTTACTAAAAA
>XM_003821812.4
GCGGCGCTGAAATTCGGCTTGGAGGCTTTTGAACCCGGAAGCAGTTGGCGGCGCTCGGAAGCGGCCGCGGATCGGGGAATTCTGCTGGCGCTGCAGCTGCAGAATGGTCGGCGGTGGCGGGAAGCGCAGGCCCGGCGGGGAGGGGCCGCAGTGTGAAAAAACAACTGATGTGAAGAAAAGTAAATTCTGTGAAGCTGATGTCTCCAGTGACCTTCGAAAAGAAGTAGAAAATCATTATAAGCTTTCTTTACCTGAAGATTTCTATCACTTCTGGAAGTTCTGTGAAGAACTTGATCCTGAAAAGCCATCTGATTCACTTTCTGCAAGCCTTGGACTTCAATTAGTTGGTCCTTATGATATCCTTGCTGGAAAACATAAAATGAAGAAAAAATCAACAGGCCTGAATTTTAACCTTCACTGGAGGTTTTACTATGATCCTCCTGAGTTCCAGACCATTATTATTGGAGATAATAAAACTCAGTACCACATGGGGTATTTCAGGGATTCTCCTGATGAATTTCCTGTATATGTTGGTATAAATGAAGCAAAGAAAAATTGTATAATTGTTCCAAATGGAGATAATGTATTTGCTGCAGTCAAATTATTTTTGACGAAAAAACTTAAAGAAATAACGGATAAAAAGAAAATCAATCTCTTGAAAAACATAGATGAAAAACTCACAGAAGCAGCCAGAGAATTGGGGTATTCGCTTGAACAGAGAACCATGAAGATGAAACAGAGAGATAAGAAAGTTGTGACAAAGACCTTTCATGGTGCAGGCTTGGTTGTTCCAGTAGATAAAAATGATGTTGGGTACCGAGAGCTCCCTGAAACAGATGCTGACCTCAAGAGAATTTGCAAGACAATAGTTGAGGCTGCAAGTGATGAGGAGAGACTAAAAGCTTTTGCTCCCATTCAGGAAATGATGACTTTTGTGCAGTTTGCTAATGATGAATGTGATTATGGCATGGGGCTTGAATTGGGCATGGATCTCTTTTGCTATGGCTCACATTATTTTCATAAAGTTGCTGGCCAGCTTTTACCTCTTGCATATAATCTGTTGAAGAGGAATCTGTTTGCAGAAATTATTGAGGAGCATCTGGCAAACAGAAGTAAAGAGAACATAGACCAACTTGCTGCATGAGTAAGGTGGCTTTGATTGGTGTACAGTATTTCAAAGGACTAGTATTAAACTTGTGATTTTTGTTTTGTTTTTAAGGAATACAAAAAATAAACATTTACTAAAAACGTTTATAAGGT

Publications

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