Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC117975837P14
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr12:22873719-22874262  UCSC
Strand -
Parental Sequence XM_034937706.1
Parental seq. overlap 460 bp
Parental seq. overlap (%) 38.3%
Genomic Region Intergenic
Retrocopy Summary LOC117975837P14, located on chr12:22873719-22874262, is a retrocopy of the parental gene LOC117975837. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC117975837
Full Name N/A
Also known as -
Coordinate chr14:45846961-45848651
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL21P18
Chimpanzee Pan troglodytes RPL21P68
Gorilla Gorilla gorilla RPL21P88
Orangutan Pongo abelii RPL21P79
Gibbon Nomascus leucogenys RPL21P48
Green monkey Chlorocebus sabaeus RPL21P38
Crab-eating macaque Macaca fascicularis RPL21P75
Rhesus Macaca mulatta RPL21P78
Baboon Papio anubis RPL21P66
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC117975837P14
CCTTTCGGCCGGAACCACCATCTTCCAGTAATTCACCAAAATGACGAATACAAAGGGAAAGAAGACAGGCACCCAATATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCCACGTATATGCGAATCTATAAGAAAGGTGATATTGTAGACATAAGAGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTCACCATGGCAAAACTGGAAGAGTCTACAGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGTCAAGAGAATTAACGTGCATATTGAGCACATTAAGCACTCTAAAAGCCGAGATGGCTTCCTGAAACGCgGTACCTGGGTTCAACTGAAGCCCCAGTCTGCTCCACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCCTGAGCTGCTGGAAACTATTCCCTATGAATTCATGGCATAATAGGTGTTTAAAAAAAAAAAAAAA
>XM_034937706.1
acagagagagagagacaacagacatgttcgcaggcatggatgaaagacctgtggggtcccagcgagaaggcggccatctgcaagccaaggagaggcctcagaacaaaccaaaccttaccacgctttgagcttggacttttagcctccagaactgcgagcaaacacatttctgttgtttaggcccccttgtctgtagtattttcttgtggcagccctagcaaactcatTCCACATTTCTTACAGAATTCTTCACTGTGGTGTTACCACAAAGATGTGTTTGTGCAATGCATTTGTTGTTCTTACTGGGCGCTGTGTGATTGAGATTACAGAACAAGGCACAACTGACTGATAACACACGGAAACAGGTTTTGCTAGAGGGAAGCAGTTGGCAGGACTTTATGAAGTCTCGGGAAATTGTATACTCCTTCACACCTAGAGTTATTTTTTTAACCCCCAAAATGATTCCTTTAAATGTTTCTTTTTTATCTGTTCACTCCCATATCCTCTTCTCTCTCCACTTCGCCACGCTTCCACTTTCCCCATCACCCAGTCCCCCCCACGACACACACACACCCGCCAACACATCCATGTGCCCTTGAGCAGGCCCTGATATCCATTTCTGCCTCTGCCTAATAAAAATTAAAATAGCTCCTTCCTTTTGGCCAGAACCGCCATCTTCCAGTAATTCGCCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCGATATATGTTCTCTAGGCCCTTTAGAAAACATGGAGTTGTTCCTTTGGCCACATGTATGCGAATCTATAAGAAAGTTGATATTGTAGACATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCTCCGCAAGTGTTATCATGGCAAAACTGGAAGAGTCTGCAGTGTTACCCAGCATGCCGTTGGCATTGTTGTAAACAAACAAGTTGAAGGCAGGATTCTTGCCAAGAGAATTAACGTGCGTATTGAGCACATTCAGCACTCTAAGAGCCAAAATAGCTTCCTGAAACACGTAAAGGAAAATGATCGGAAAAAGAAAGAAGCCAAAGAGAAAGGTACCCGGGTTCTACTGAAGCACCAGCCTGCTCCATCCAGAGAAGCACACTTTGTGAGAACCAGTGGGAAGGAGCCTGAGCTGCTGGAACCTATTCCCTGTGAATTCATAGCATAACAGGTGTTAAAAAAAAAAAAAAA

Publications

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