Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NACAP8
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr12:90652147-90652740  UCSC
Strand -
Parental Sequence XM_008978557.2
Parental seq. overlap 547 bp
Parental seq. overlap (%) 66.5%
Genomic Region Intergenic
Retrocopy Summary NACAP8, located on chr12:90652147-90652740, is a retrocopy of the parental gene NACA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NACA
Full Name N/A
Also known as -
Coordinate chr12:32180823-32195645
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NACAP8
Chimpanzee Pan troglodytes NACAP8
Gorilla Gorilla gorilla NACAP8
Orangutan Pongo abelii NACAP9
Gibbon Nomascus leucogenys NACAP4
Green monkey Chlorocebus sabaeus LOC103238540P5
Crab-eating macaque Macaca fascicularis NACAP8
Rhesus Macaca mulatta NACAP8
Baboon Papio anubis LOC101018001P7
Golden snub-nosed monkey Rhinopithecus roxellana NACAP8
Marmoset Callithrix jacchus NACAP7
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NACAP8
GGCAGCAGCTGAAATTGTTGAAGAACCAGTCAGTAAAGCAAAACAGAGTTGGAGTGAAAAGAAGGCACAGAAGGCTATGTCCAAACTGGGTCTTTGACAGGTTATAGGGGTTACTAGAGTCACTATCTGGAAATCTAAGAATATCCTCTTTGTCATCGCAAAACCAGATGTCTACAAGAGCCCTGCTTCGGATACCTATATCGTTTTGGGGGAAGCCAAGATTGAAGATTTATCTCAGCAAGCACAAGTAGCAACTGCTGCGAAATTCAAAGTTCAGGGTGAAGCTGTCTTAAATGTTCAAGAAAACACACAGCCTCCAACTGTACAAAAGGAGAGTGAAGAGGATGAGGTTGATGAAACAGGTGTAGAAGTTAAGGACATAGAATTGGTCATGTCACAAGGGAATGTGTCCAGAGCAAAGGCAGCTGGAGCCTGGAAGAACAAAGTAATAATATTGTAAATGCTATTATGGAATTAACAGTGTAACCATCTGAAAGCAACTTTTATTGGTGTCTCAAATGAGTGACTGCAGCTTGGTTTGAAATTTGTGCTGCTTCTATCATAAATAAAGTTATGGCTTCTTGTTGGATGAAA
>XM_008978557.2
TTCTGCCGCCATCTTGGTTCCGCGTTCCCTGCACAGCCTCCTTTTTATTCCCTTCCTTCAGAAATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGCTATGTCCAAACTGGGTCTTCGGCAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCACAAAACCAGATGTCTACAAGAGCCCTGCTTCAGATACTTACATAGTTTTTGGGGAAGCCAAGATCGAAGATTTATCCCAGCAAGCACAACTAGCAGCTGCTGAGAAGTTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACACAGACTCCAACTGTACAAGAGGAGAGTGAAGAGGAAGAGGTCGATGAAACAGGTGTAGAAGTTAAGGACATAGAATTGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGATTATGGAATTAACAATGTAACCATATGGAAGCAACTTTTTTTGGTGTCTCAAAGGAGTAACTGCAGCTTGGTTTGAAATTTGTACTGTTTCTATCATAAATAAAGTTATGGCTTCTTGTTGGATGAACTCA

Publications

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