Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name POLR1FP1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr6:85050777-85051656  UCSC
Strand -
Parental Sequence XM_003825029.4
Parental seq. overlap 705 bp
Parental seq. overlap (%) 18%
Genomic Region Intragenic (ZNF292)
Retrocopy Summary POLR1FP1, located on chr6:85050777-85051656, is a retrocopy of the parental gene POLR1F. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name POLR1F
Full Name N/A
Also known as TWISTNB
Coordinate chr7:20369819-20383414
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens POLR1FP1
Chimpanzee Pan troglodytes TWISTNBP1
Gorilla Gorilla gorilla TWISTNBP1
Orangutan Pongo abelii TWISTNBP1
Gibbon Nomascus leucogenys TWISTNBP1
Green monkey Chlorocebus sabaeus TWISTNBP1
Crab-eating macaque Macaca fascicularis TWISTNBP1
Baboon Papio anubis TWISTNBP1
Golden snub-nosed monkey Rhinopithecus roxellana TWISTNBP1
Marmoset Callithrix jacchus POLR1FP1
Mouse lemur Microcebus murinus TWISTNBP1
Rhesus Macaca mulatta Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>POLR1FP1
GCTACCTTAACAGGAAATACACTGGCATTGCAGAGAAGCTGAATGTGAAGCTCCTGCACTATTCTGAGAGCCTTTTAGGTGTCCCCATTGCATATAACATGAAAGTTGTGGTGAACTGGGAGATATTTATGATGATCAAGGACACATTAATCTTAACATTGAAGCAGATTTTGTTATTTTCTGCCCTGAACCAGGGTAAAAGGTTATAGTACAGTTAACAAAGTGTCTTCTAGTCAGACTGGCTATTTTGTACAAAAATATTTTAATACGTCCATCCCTAAACCTGAGATGTCAGCTGAGCAGTGGCAGGCTGTGGAGATAAATGTGGGTGATGAACCAGAATATGAAGTGTTTCATCTAGATTAAGATGCTACTGAAATATTCTGCATTTAGGGAAAACAATCACTAGTTTACAACCCAAGAGCTCTGAAGTTTCTGATAAACCAGCACTGAAGAAGCTTTTGAAAAACTTCCAAAGAAGAAAAAGAGAAACCAGAAAGACCCAGAGATGAATGAAGTGGATGATGGTACCACAAGCTAGCAAATTTTGCAGATGTCACCCCAAAGGAAGAGTTAGACTTACAGATTATTACTAATGTGAATAGCCTCTGGGAAGATGAGCCAAAGGAGGAGAAAAAGAAAAAGCATCAGGACTAGGACCTTGTTTTCCAAAGCAGTGACTCCAGCGGTTATCAAAGTGACCATaGCTAAATTTACCCCACTTTTGGAATGCTCGCCTAAACAGAAAATAAAAAAGTAATCTTCCTTAGGGAGTTTTAAATATGATTCAGTTTTTAAAAGATTGACTTATACACAATGGATGAATAAATGTTTTGAATGATATGG
>XM_003825029.4
TTGCGTCAACGGCGCGCGCCGTGGGAACCTTGACAAGCAGCATGGCTGCAGGTTGCTCAGAGGCGCCCCGGCCAGCGGCGGCTTCTGATGGGTCTCTGGTAGGGCAGGCTGGCGTCCTGCCTTGCCTAGAGTTGCCGACTTATGCCGCTGCTTGTGCGCTGGTGAACAGTCGCTACTCATGCCTGGTGGCCGGGCCGCACCAAAGGCACATTGCGCTGTCGCCCCGCTACCTTAACAGGAAACGCACCGGCATTCGAGAACAGCTTGATGCGGAGCTCCTTCGCTATTCTGAGAGCCTTTTAGGTGTCCCTATTGCATATGATAACATCAAAGTCGTGGGAGAGCTTGGAGATATTTATGATGATCAAGGACACATTCATCTTAACATTGAAGCCGATTTTGTTATTTTCTGCCCTGAACCGGGGCAAAAGCTTATGGGTATAGTTAATAAAGTGTCTTCTAGCCACATTGGCTGTTTAGTACATGGGTGTTTCAATGCCTCCCTTCCTAAACCTGAGCAGTTGTCAGCGGAGCAGTGGCAAACCATGGAGATAAACATGGGTGATGAACTAGAATTTGAAGTATTTCGTTTAGACTCAGATGCTGCTGGAGTATTCTGCATTCGGGGAAAACTAAATATCACAAGTTTACAATTCAAGCGCTCTGAAGTTTCTGAAGAAGTTACAGAAAATGGCACTGAGGAAGCTGCTAAAAAACCTAAAAAGAAGAAAAAGAAGAAAGACCCAGAGACATATGAAGTGGACAGTGGTACCACAAAGCTAGCAGATGATGCAGATGACACTCCAATGGAAGAGTCCGCCCTGCAGAATACTAATAATGTGAATGGCATCTGGGAGGAGGAGCCAaagaaaaagaagaagaagaaaaagCACCAGGAAGTTCAGGACCAGGACCCTGTTTTCCAAGGCAGTGACTCCAGTGGTTACCAAAGTGACCATaaaaagaaaaaaaagaaaagaaaaCACAGTGAAGAGGCCGAATTTACCCCACCTTTGAAATGCTCGCCAAAAAGAAAAGGGAAAAGTAATTTTCTTTAGTGTATTTTAAACACGATTCAGTTTTTAAAAGATCGATCTACATACAATAGATGAATAAATGTTTTCAGTGATATGAAAAGGTTAAGTATGCCAGTAGTTTACAAAACAGAAAATACTTAACTAGGAGTAGGAGGCTTTATATGCTAAAAATGATAAAACTGACTGTAAATTAatttggggaaagccagtattgttaaagtaccattttatacaaaataaaaagctgctctcactgtcagctctcctattcttccaggttttgcactctacataaaatTATTTCTACAATGTCAAGACTAGCCAAAGGACTTTATAATACAATATTATATTACTAAAGAATCAGTTAAGTTTGAGATTTTGATGATTTGATTTTGTGTGTGTTTAATAGGCTTCACCTTATTACATGCTATTTTATTTTGCTTTTTTAAACACTCAGGACATTAACTAACTAATTTTAGGTTTTCCTTTATCATGGCTTTCTACAGTATTTCTATTGTTTAACATAAAATAGTTTGCCAAAGAAGTTTCTGAAGTCTTCACAGCTCTTAAAAGCCAGGCCAGTACTGACTGTGTGGTGGTAAATGCTATTCATTATTCTTTTCTTTCTTCCGAGTGCATGTGTGTCCTTGTCTTCTTAAGTCTGAGAGGTTGCTGGAAAGGACTGTTTTCTTGTACTTGTTCATTTGTGCCTCAGCCATTCTAGTTTTGTTGTGTGTTGGAGGACAGTCTAATGAAGACAGGATAAATGTGATTCTGACTAGTGGGAAATTTCAGATTACTTTTTAATGATTGGAATGGGCTATAAGATATTGTGCTGAAGAGAAAACAGTTGTTCTGTTCACTGCTTTCATTGAGAAAATGTGGAATGTCTCTTGACTAATTGACAAAGTGTAATGAAATGACAAGCTGGTTGAAGCTGGTAATCAATGCATGGCCATatttattcattttccacacacttgaccatctactttgtataacacattctgctaaggcccagggatacaatggcaaacaagatagatgtagttccttcccttgtggcatgtcataagagaaacagatgtgcatatacacacaataaataagaaaattaataattgtattaagtggtatgaaaaaaaGGGGGAGGATTGTTCACTCACTGTTACCTGTGTTAGTATCTGCAAATGCATGAATGGTTGAACTCCCATGTCAGCATTTTTGTTGCCATTTATTTAGTACCAGACATAGTGCTGGTCTCACAGCTTAATATTTGGTAATGAATAAATTCTGCTAGTGGTATATGTTGATCTGAACTTACAATGATGGGATATAGAATTGGCAGAGTGGCAGATGTTCACAATTGTCTACAAGTAGATGTGCTAGACAATGGAAGGATGCAGGCCAACCTCTCTGATTACAATTGAGATTcatgtgactattgagccctggaaatgtagcttgtccaaattgagatgtgctgtcagtataaaatacataccagattttaaagatgtaccaaaaaatgtaaactatctcaatttttatattggtgaaatcaatatgtcttggtatagtggcttaaataaaacaattttagcctttctcagtttatttttctgcaaaaagattaaaaattgtacatgaagctcatgttaactttcttttggtcagtgctATTTTAAAGGAAGTATGAGTTGAAAAAAATTTGAAATAAACTATATCATATTACCAGGACTTAATATAGTGGCATACCCAGGAAATGCTTAGTAAGTGTTCCCTTCACATTTTAAAATTTGAGTATACAATCATGTTTGACAATATAGAAATTTAATTTTTAGTGAAACAGTTCTAAACCCCTTTTCCATAGACACCAAGAAAGATGCCAAATTTATGCTATTCCTGGAAAAATACATTGTGGCTTAGCAAATAAGCAAGTTCCCACGTTACTTTTGTTTTGCTTCAAGTAATACTTCTGCCAGTTGTGTTTTATGAATTAAACAGGGAGCGGCATGCTGAACTTGAAACTAGATTTGTTCCTGCTTTTTTCACAATGTGAGCAGTTTTGAAAAGTCAGATCTGGCCATTTGTCTTTCCTAGAATAGCATAACTCTGTTCATTGTTTTTTTGTTTGTCTTTCTGACACAGACTGATGATGGTGTCCACTATGTATTCTTCAAAACATTTGTCACATGCTGCACTAACCTAGTCTATCTTTTCTATCTTGGAATTTGCTCATACAAACCCTATAGCCTCGACTAGATCCCTTACCCTCTCTCCAGTTCCTATCATTCACCCATTTCACtgtgcaagacacctcactagtcaccagtgatacagaaatgacttttaagcagtttctgctcttaagggcttaccgttttgtctataagatacacaagtataaatgacaagtacaaataacaatgaatgtttaatgctttatgtttagtgtttaagcttgttgttggaagagcagcattttgacccttggagacgaaaaactagctgtggcattccaggtggagaacctgacagaggactaagaagttatctaatgtaaaagACCTCAGGCACCACCTTTGCATAAACTTTTTCCAGACAAGGCTAAATGTGCATGCTTCATAACCATAATTCTTATTTTTCTTTAATAAATATTTTTCTACTTGTAacactgtgcattatttcaaactgtttacctgtttgtaaagcttgtctcttaatcaaatttgtcttgaccaaataagtttcctgagggctggaattatgccttaactatatctatagtatttaacagtgaatcctttgtataatgaaagcatcaacagataattttaaattgatAAATAAAAAGCACAGTTTCAAATGGTA

Publications

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