Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name RAP1AP1
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr14:55036120-55037332  UCSC
Strand +
Parental Sequence XM_034933629.1
Parental seq. overlap 1152 bp
Parental seq. overlap (%) 44.1%
Genomic Region Intragenic (NPC2)
Retrocopy Summary RAP1AP1, located on chr14:55036120-55037332, is a retrocopy of the parental gene RAP1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RAP1A
Full Name N/A
Also known as -
Coordinate chr1:114279255-114376977
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RAP1AP
Chimpanzee Pan troglodytes RAP1AP1
Gorilla Gorilla gorilla RAP1AP2
Orangutan Pongo abelii RAP1AP1
Gibbon Nomascus leucogenys RAP1AP1
Green monkey Chlorocebus sabaeus RAP1AP2
Crab-eating macaque Macaca fascicularis RAP1AP1
Rhesus Macaca mulatta RAP1AP1
Baboon Papio anubis RAP1AP1
Golden snub-nosed monkey Rhinopithecus roxellana RAP1AP1
Marmoset Callithrix jacchus RAP1AP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RAP1AP1
ATCAGTATTTAAACAGACCACATCACAGGTGAGCTAGTGGTCCTTGGTTCAGGAGGTGTTGGGCAGTCTGCTCTGATGGTTCAGTTTGTTCAGGGAATTTTTGTTGAAAAATATGACCCAACGATAGAAGATTCCTACAGAAAGCAAGTTGAAGTCAACTGCCAACAGTGTATGCTTAAAATCCTAGATACTGCAGGCACGGGGCAATTTACAGCAATGAGGGATTTGTATATGAAGAATGGCCAAGGTTTTGCACTAGTATATTCAGTCCACGTTTGACTTACAGGACCTGAGGGAACAGATTTTACTGGTTAAGGACACAGAAGATGTTCCAATGATTTTGGTTGGCAATAAATGTGACCTGGAAGATGAGTGAGTAGTTGGCAAAGAACAGGGCCAGAATTTAGCATGACAGTGATGGAACTGTGCCATTTTAGAAAAATCTGCAAAGTCAAAGGTCAATGTTAATGAAATATTTTATGACCTGGTCAGACAGATAAATAGAAAAACACCAGTGGAAAAGAAACAGCCTAAAAAGAAATCATGTCTGCTGCTCTAGGCCCATAGTCAGCAGCAGCTCTGAGCTAGGTTACAGGAATGAAGAACTATTGCCTAATTGGAAAGTGCCAGCATTCCAGACTTCAAAAAATAAATTTGAAGAGGCTTCTCCTGTTTTATACATTATGTGAAGAATTTAGATCTTATATTGGTTTGTATAAGTTCCCTGGAGAAAAAAAACTGCTCTGTGTATATCTCTTGGAAAATAAGACATAACAGATGTGAAAATATACTTGACTCTAATATGATTATACAAAAGAGCATGGATGCATTTCAAATGTTAGATATTGCTACTATAATCAAATGATTTCATATTGACCTTTTTATCATGATTCCTCCCTATCAAGCACTAAAAAGTTGAACCATCATACTTTATATCTGTAATGATATTGATATTGCAGTAGATAACTTTTTTGAATCAATTCATTTTATATTTTAAAAATTATGGAATATCCTCTGTCATTATATTCTAATTGAAATTGTGCATAATGCTTTGGAAAAATGGGTCTTTTATAGGAAAAAAACTGGGGTAACTGATTTCTATGACTTTCAAAGCTAAAATATACAGTATACTAAACCAACTCTAATATTGCTTCTTGTGTTTTACTGTCAGATTAAATTACAGTTCTTATGTATGATTAAATTTTAGTACATT
>XM_034933629.1
cgccgccgctcccgaggccgctgccgccgccgctgctgctgccgtcgccgTGCAGAGCCggagcaggagccacggccgagaggagggaggaggaggaggaggaggaggtggaggaggtggaggaggtggaggaggCGCCGGACCGGGGGGgatagattcccagaagtgggataactggatcagagggtgattaccctgtgtataagagtatgtgtctcactgcaccttcaatggcattgagtagATCGTCAGTATTTAAACAGATCACATCATGCGTGAGTACAAGCTAGTGGTCCTTGGTTCAGGAGGCGTTGGGAAGTCTGCTCTGACAGTTCAGTTTGTTCAGGGAATTTTTGTTGAAAAATATGACCCAACGATAGAAGATTCCTACAGAAAGCAAGTTGAAGTCGATTGCCAACAGTGTATGCTCGAAATCCTGGATACTGCAGGGACAGAGCAATTTACAGCAATGAGGGATTTGTATATGAAGAACGGCCAAGGTTTTGCACTAGTATATTCTATTACAGCTCAGTCCACGTTTAACGACTTACAGGACCTGAGGGAACAGATTTTACGGGTTAAGGACACGGAAGATGTTCCAATGATTTTGGTTGGCAATAAATGTGACCTGGAAGATGAGCGAGTAGTTGGCAAAGAGCAGGGCCAGAATTTAGCAAGACAGTGGTGTAACTGTGCCTTTTTAGAATCTTCTGCAAAGTCAAAGATCAATGTTAATGAGATATTTTATGACCTGGTCAGACAGATAAATAGGAAAACACCAGTGGAAAAGAAGAAGCCTAAAAAGAAATCATGTCTGCTGCTCTAGGCCCATAGTCAGCAGCAGCTCTGAGCCAGATTACAGGAATGAAGAACTGTTGCCTAATTGGAAAGTGCCAGCATTCCAGACTTCAAAAATAAAAAATCTGAAGAGGCTTCTCCTGTTTTATATATTATGTGAAGAATTTAGATCTTATATTGGTTTGCACAAGTTCCCTGGAGAAAAAAATTGCTCTGTGTATATCTCTTGGAAAATAAGACAATAGTATTTCTCCTTTGCAATAGCAGTTATAACAGATGTGAAAATATACTTGACTCTAATATGATTATACAAAAGAGCATGGATGCATTTCAAATGTTAGATATTGCTACTATAATCAAATGATTTCATATTGATCTTTTTATCATGATCCTCCCTATCAAGCACTAAAAAGTTGAACCATTATACTTTATATCTGTAATGATACTGATTATGAAATGTCCCCTCAAACTCATTGCAGCAGATAACTTTTTTGAGTCATTGACTTCATTTTATATTTAAAAAATTATGGAATATCATCTGTCATTATATTCTAATTAAAATTGTGCATAATGCTTTGGAAAAATGGGTCTTTTATAGGAAAAAAACTGGGATAACTGATTTCTATGGCTTTCAAAGCTAAAATATATAATATACTAAACCAACTCTAATATTGCTTCTTGTGTTTTACTGTCAGATTAAATTACAGCTTTTATGGATGATTAAATTTTAGTACAttttcatttggtttgtgtgtttttgttattgtttATAGATTTAAGGCGTTTATTTTATAATGACCACGTTGTTTTAAATGCGACAGTAGCTCCTTTCTGCCTAGTATCTGCAGAACACTGGCTTTAAACTATACTAAGTAACTGGTGATTTCTCTAGGAACAGACCTCGCACTTTCTGTCCTAAATATATTTATTCCTACTATACAGTAAAGTACATCAGACAACATAGAATAGTTTTGTATATTCTCTCTTGATCTTAAAGATTGTATCTTACTGAATATCCCACTGTATATTATTTTTATATGTAAAAAGATAAGTTTAATACTGTATCAGGGTTTAACTTTTACTATTTCAGATCTTCCACAGCTTGTAATTTCATCAAGGGAATCCTTTTGCATTGTTAATTTGTTGGGTGTGAGTCCACCAATGAAGTGTTATGTGAAAAATTTCAAACTTGCTTTATAATAGATTGAAGAATTTGAGAGAAGTGAGAGAAAGTTAAAACACATAAAAGGAATGTGTTACTTTTGCTTAAACTACTTATGAAATAGTATGGTAGTAGTAATATGGAAGAGATTGCTAAGTTAAAATTGTAGCTTCCTATATAGTGGTGCTTTTTCTTTTCCTTCCCAGTTATTTTCCTCTTTACAAAAGATAGGGCTTAAGTAAGACATGGACCCAGGGTGATACTACTTATGTAGTCTCTATAAAGAGAGGTAGAACAAAAAGCTTGTTAGCCAATTAAGTTCTGGAAAAGGAAAGAAACAAGCTTAGAAAACCCTGTGCCTTGTCCTCAAATATTAAGGAGGAGACCAGTCCTAGAAAGTCTAAGTCATTGCTCAGGGATCTCTAGATACTGTCTCTTTGCAACTAGGTATGAAGAAGTGTTCATGCCTTGCTGAGATTTTCCAGGCATGTGGTCAGCCTGTCACTTACTAAACTGAAATTTTAAAATCAGGTTTCAAATGTTAAGCTTTGACCAACCTGAGAAAATGTTAAAGTATTGTTTTTAAAAAAATGGAAAttttttttgtttgtgtttttgttttagttttGAATAAACTTAGTTACCTTACA

Publications

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