Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RFPL4AP1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr8:65036202-65037158  UCSC
Strand +
Parental Sequence XM_034945247.1
Parental seq. overlap 831 bp
Parental seq. overlap (%) 31.6%
Genomic Region Intragenic (C8H8orf34)
Retrocopy Summary RFPL4AP1, located on chr8:65036202-65037158, is a retrocopy of the parental gene RFPL4A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RFPL4A
Full Name N/A
Also known as -
Coordinate chr19:52810147-52813283
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RFPL4AL1P1
Chimpanzee Pan troglodytes RFPL4AP1
Gorilla Gorilla gorilla LOC109024957P1
Orangutan Pongo abelii LOC100432849P1
Gibbon Nomascus leucogenys LOC115837046P1
Green monkey Chlorocebus sabaeus RFPL4AP1
Crab-eating macaque Macaca fascicularis LOC102141558P1
Rhesus Macaca mulatta RFPL4AP1
Baboon Papio anubis LOC101001532P1
Golden snub-nosed monkey Rhinopithecus roxellana RFPL4AP2
Marmoset Callithrix jacchus LOC100409497P11
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RFPL4AP1
GAGACATTTGCCATGGCTGAACACTTCAAAGAAATAATTAGATGTCGCATCTGTCCAAATGATCTTGAAGAACCTGTGCAACTGAAATGTGGATATGCCTTCTGCCTCCAATGCATCAATTCACTGCAGAAGGAGCCCATGGGGAAGGTTTACTGTGCCCCTTCTGCTCTGTGGTCTCTCCTAAGAGTAATATCAAGCCCAAGTTCAAGCTGAGGGCGCTGGTTTCCATGATCAAGGAAGTAGAGCTCAAGCTGAAATCTATTCTAACAATGAACCCAAGGATGAAGAAGTTTCAAGTGGATATGACCTTGGATGTGGACACAGCCAACAACCATCTCACCATTTCTGAAGACCTAAGTAGTGTCCATTTGGGAATTTCAGCCAGAATAGGAAGGAGCAAGCTGAGAGGTTCAACTCTGCACTGTGTGTCCTGGGCGCCCCGGCTTCACTTCCAGCCACTGTTACTGGGAGGTGGATGTGGGCACCAGCAAAGTATGGGATGTGGGCATTTGTAAGGAATCTGTGAATCAACAGGGGACATTGTACTTTCTTCAGAACAAGGCTTCTGGACTGTAGGTTCCAGAAAAGGAAAGGTCTTTGCTGCCAGCACTATGCCTTTGCCTGTTCTCTAGAGGTGAGTCCCCAGTTGCACAGAGTGGGAATTTTCCTGGATATAGGTATGGGTTTCATTTTTTTAATAATGTTAGTGATAGGTGCCATATCTACACACGCAACAAAATTTCTTTTAGCCACTGTGTCCATTTTTTGCTCATAAACATGAAACTCAAGATGGAGCTTTGTGAGTATCTGTCCCGTGATCAATCCAGACAATGCCAGTCCCCCAATTTATTCTGGGGAAAGTAAATAAACATTTGAATATAATCATCAATAGGAAGTTTCTGTATGCCCATAGCCAGAGCTAAGAATTTTCTGCTAGATACACATAGGTACAAAGGG
>XM_034945247.1
caggaggctctctggctgccagagagaccccagaccagtttccaggttctggatgctgttgggagaacgaattcagggatgagccagaatgaagtgaaaggcaagaagtttctattccagagcaaaagcacactgttaggagagaagtgtgggcgtgattctgaaagctcgtggcgctcaatggagttcggggtttctatttttgtcagtccttgtaaataggacgtgagctaatcattaggttttctaggaaaaaagcagagagtttttagaattggtgaggtacccattttttgtactacatatgggcatgctggggtcagccgtgacactgcagagtgtgtgatttagtgtggtaatgaccatggtcattactgtggcaatgctttcaaccagcttcactccctccggttttttagcacctcatgagcccaggttcctccttgtccttgtaattttaatgacaagtggctaattttaacagccactgttttggtcttatgtgaaactgtcactggatacgttctccattctcttgtgaccacacagtattcctGCCTCAGtttaaattgcatttctcggatggtgagtgaggttgagcttgttcttcagtacttgctggtcgttggtgtgtgcttttcagagaaatgtctattcaggtttttgcccattggaatttggattattttggcttttttttctttttgctacggccttgaaagtattccttatatattttggatattaatccactgtcatatatatggctgcttgtttggtttcttttagttctgttttttgctttttttttgtttcctcgctatgcagaagattcagttttacctggtacgacttatttgtattttgtgtcttgtccttttggtgCGCTATCAGGGTTTTCACCACATCCACTTTGCACAGTTGGGGAAGTAGAAGGTCTTCAAATGGACTCcagcagtgtccaattgaaacataagataacccatatatgtaattgtaaattcattttctggtagtcacgtaaaatagaacaaaacaaacctaatgaattttaactcaaaatatactatcgtttaacatgtgagcaactttaaacgttctcaagcagatagtttacattctcttttcccccttatgtcttcaaaaataagagtatatttggctcacagcacatctccattcagatacgccccatttcaggactcaatagccatttgtcactggtggatatcatatcaaacagctcagGTCTAGACTCCTTTCCTCTTTCAACTCAAAGTCTTTCGGTGAATCATGCCCTTTATTCCAATGAGTAATACAGATATTAGAAGTTCAGGGCCTCGAGTCATTGACATTTGTATTCATGTTGTGTCTTCATCACTAGCAGTAGTGATTTTAAGTATCGTGCCATGATAGCTCCATGCATGTAAAGATAAAAGCCCCAGACACTATCAGCTGTTCATTCAGCTCGTGGAAATTCTAATTCCGTGTTCATTTTTTTTTCTATAGACATCTGCCATGGCTGAGCACTTCAAACAGGTCATTAGATGTCCTGTCTGCCTAAAAGATCTTGAAGAAGCCGTGCAACTGAAATGTGGATATGCCTGCTGCCTCCAGTGCCTCAATTCACTCCAGAAGGAGCCCGATGGGGAAGGTTTACTGTGCCGTTTCTGCTCTGTGGTCTCTCAGAAGGATGACATCAAGCCCAAGTACAAGCTGAGGGCGCTGGTTTCCATCATCAAGGAACTAGAGCCCAAGCTGAAAAAGGTTCTAACAATGAACCCAAGGATGAGGAAGTTTCAAGTGGATATGACGTTCGATGTGGACACAGCCAACAACTATCTCATCATTTCTGAAGACCTGAGGAGTTTCCGAAGTGGGGATTTGAGCCAGAATAGGAAGGAGCAAGCTGAGAGGTTCGACACTACCCTGTGCGTCCTGGGCACCCCTCGCTTCACTTCCGGCCGCCATTACTGGGAGGTGGACGTGGGCACCAGCCAAGTGTGGGATGTGGGTGTGTGCAAGGAATCTGTGAACCGACAGGGGAAGATTGTGCTTTCTTCAGAACACGGCTTCTTGACTGTGGGTTGCAGAGAAGGAAATGTCTTTGCTGCCAGCACTGTGCCTATGACTCCTCTCTGGGTGAGTCCCCAGTTGCACAGAGTGGGGATTTTCCTGGATGTAGGTATGAGGTCCATTGCCTTTTACAATGTTAGTGATGGGTGCCATATCTACACATTCATCGAGATTCCTGTTTGCGAGCCATGGCGTCCATTTTTTGCTCATCAACGTGGAAGTCAAGATGATCAGAGCATCCTGAATATCTGTCCTGTGATCAATCCAGCCAGTGCCAGTGCCCCCGTTTCTTCTGGGGGAAAGTAAATAAACATTTCAACATAATCATCTTTAGGAAGTTTCAGTGCGCCCATAGCCATAGCTAAGAACTTTTCTGCTAGGTACACATAGGTACAAAGGGACAGAAGGGGAAGAGCCATCACTCTGTAAACCATGAACAGAAAGCAATTATATTAATGAGGGGAAAATTACATTGTACTTCAAGTTTGTCATGTTGTTTTCTTTGGGGCTTATGTTTATATTTCTGTTCAATAAATATTTTGAAAATTCA

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