Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RNF2P2
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr9:6483716-6485889  UCSC
Strand -
Parental Sequence XM_034942408.1
Parental seq. overlap 1513 bp
Parental seq. overlap (%) 46.4%
Genomic Region Intergenic
Retrocopy Summary RNF2P2, located on chr9:6483716-6485889, is a retrocopy of the parental gene RNF2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RNF2
Full Name N/A
Also known as -
Coordinate chr1:160568438-160626783
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RNF2P1
Chimpanzee Pan troglodytes RNF2P2
Gorilla Gorilla gorilla RNF2P2
Orangutan Pongo abelii RNF2P2
Gibbon Nomascus leucogenys RNF2P1
Green monkey Chlorocebus sabaeus RNF2P2
Crab-eating macaque Macaca fascicularis RNF2P2
Rhesus Macaca mulatta RNF2P2
Baboon Papio anubis RNF2P3
Golden snub-nosed monkey Rhinopithecus roxellana RNF2P3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RNF2P2
GGCTCGCTATATTGAAAGGCGGCGCCAGCTGCCGCGGCAGCCGATTACCCGAGTCTCGCTCCTGCATGGCCAGTGAGCCCCTGGCTGGGGCGGGAGCCTCAATGTCTCAGGCTGTGCAGACAAAAGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAGTTACAATGAACACCTCAGTGACTCTCTTACAGAAGGCAATAACAGATGGCTTAGAAATTGTGGTTTCACCTCGAAGTCTGCACAGTGATTTAATGTGCCCAATTTGTTTGGATATGTTGAAGAACACCATGACTACAAAGGAGTCTTTACATCGTTTCTGTGCAGAGTGCAACATCATAGCCCTTAGAAGTGGCAACAAAGAATATCTTACCTGTTGGAAAAAACTGGTTTCCAAAAGATCACCAAGGCCAGACCCAAAGTTTGATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAATATGAAGCTCATCAAGAGAGAGTATTAGTCAGGATCAGCAAGCACAATAATCAGCAAGCACTCAGTCACAGCACTGAAGAAGGACTGAAGATAACTGCAGCGAGGCAAGAAACAATAGATTGAAAATGGTAGTGGAGCAGAAGATAACGGTGACAGTTCACACTGTAGTAATGCCTCCACACATAGCAATCAGGAAGCAGGCCCTAGTAACAAATGAACCAAAACAACTGATGATTCTGGGCTTGAGCTTGATAACAACAATGCAGCAATGGAAATTGATCCAGTAATGGATGGCGCTAGTGAAATCGAATTAATATTCAGGCCTCCTCCCACACTTATGGAAAAAGATGACAGTGCACAGACAAGATACATAAAGACTTCTGGTAACACCACTGTTGATTACTTATCCAAGTATCTGGCTGTGAGGTTAGTTTTAGAAGAACTTTGAAGCAAAGGTGAATCAAACCAGATGAGCCTTGATACAGCCAGTGAGAAGCAGTATACCACTTATATAGTAACAGCCAGTGGCCAGTTCACTGTATTAAATTGCTCTTTTTCTTTGGAATTGGTCAGTGAGAAATACTAGAAAGTGAACAAACCCATGGAACTTTACTATGCACATACAAGGGAGCACAAATGAGCTTTTAAAAACCAATTCTGAGACTGAACTTTTTTATAGTGCATTTCTTTAATATTAAAGATGTACCAgGATGACTGGCATTACTTTTATGGACAGATCTTGGATATGTTGTTCAGTTTTCTTTCTGAGCCAGACTCGTTTACGCTATTCAAATCTTTTCCCCTTAACTTAAGATTTCCTTTTTGGAAGGGACTGCAATTATTCAGTACTGTTTTCTTTTCTTTAACAAAGTGTGGTTCCACTTGGAGCATCCTTTGACCCAGGAATTTTTCATAGTTTCTGTATTCTTAAAGATTCAGTTGGCTGTCCTTTTCCCGCTCCCCTCAAAAGATTTTTAGTCATACACAATGTTAAATATTATGTATTCCGACTTTTTTTTCCCCCGGAGTCTTGTATATTCATAGTTTTCTATATAAACTGTAGTACCATCATGAAGACCCAAGGCTCAAATTTACTGTCCTTAAAAACAGTTCTCATAGGATTATTCTTTTCATGGTATTTCTTTCATAATATCTCATTTTAAAAAGAAGTTCTTTATGAACTTAATGTCCATTGTCATGCAATGTAATTTTTTTTCCCATTTTCCCCCCATAATTTTGGAATTTCTGGTCCTGGAAAGAATCAAACAAAATCTTACATTCCATGAGAACTTGGTTCATGAACAGATTTTGCTGAAGAAAGAAAAATTAAATTGGGAGTAAAATACAGTCTTCAAGTATT
>XM_034942408.1
GGCGCGGGTTCTCCAGGCCAACACGCGGCGGCGCACCCTCCCCTCGCGCCGCGGGCCTCCCCGCGCCGTGCACGTCCTCGtcccgcgcctccgcccctcgctcgctcgctccttcccgccctcccCGCAGCGCCGGCCGAGCCGGCTTCCCCTCAGTCTCTCATGAATATTGAGCGGCCCCTGTTGTATTTCCCGAGCTCCATTGCGGAAGCTGAGGCTCGCCATATTGTGCGGCGGCGCCGGCGGCCGCGGCAGCTGATACCAGAGTCTTGCTCCGGACGCGGCCAGCGGAGCCCCGGGCTGGGGCAGGAGCCGCAATGTCTCAGGCTGTGCAGACAAACGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAGTTACAACGAACACCTCAGGAGGCAATAACAGATGGCTTAGAAATTGTGGTTTCACCTCGAAGTCTACACAGTGAATTAATGTGCCCAATTTGTTTGGATATGTTGAAGAACACCATGACTACAAAGGAGTGTTTACATCGTTTTTGTGCAGACTGCATCATCACAGCCCTTAGAAGTGGACTGCAGCGAGGCAAGAAACAACAGATTGAAAATGGTAGTGGAGCAGAAGATAATGGTGACAGTTCACACTGCAGTAATGCATCCACACATAGCAATCAGGAAGCAGGCCCTAGTAACAAACGGACCAAAACATCTGATGATTCTGGGCTAGAGCTTGATAATAACAATGCAGCAATGGCAATTGATCCAGTAATGGATGGTGCTAGTGAAATTGAATTAGTATTCAGGCCTCATCCCACACTTATGGAAAAAGATGACAGTGCACAGACGAGATACATAAAGACTTCTGGTAACGCCACTGTTGATCACTTATCCAAGTATCTGGCTGTGAGGTTAGCTTTAGAAGAACTTCGAAGCAAAGGTGAATCAAACCAAATGAACCTTGATACAGCCAGTGAGAAGCAGTATACCATTTATATAGCAACAGCCAGTGGCCAGTTCACTGTATTAAATGGCTCTTTTTCTTTGGAATTGGTCAGTGAGAAATACTGGAAAGTGAACAAACCCATGGAACTTTATTACGCACCTACAAAGGAGCACAAATGAGCCTTTAAAAACCAATTCTGAGACTGAACTTTTTTATAGCCTATTTCTTTAATATTAAAGATGTACTGGCATTACTTTTATGGACAGATCTTGGATATGTTGTTCAATTTTCTTTCTGAGCCAGACTGGTTTACGCTATTCAAATCTTTTCCCCTTTATTTAAGATTTCCTTTTTGGAAGGGACTGCAATTATTCAGTATTTTTTTCTTTCCTTTAAAAAAATATATCTGAAGTTTCTTGTGTTTTTTTTTTCCCCACAAAGTGTGTTTCCACTTGGAGCACCCTTTTGACCCAGGAATTTTTCATAGTTTCTGTATTCTTATAAGATTCAGTTGGCTGTCCTTTTCCTGCTCCCCTCAAAAGATTTTTAGTCATACAGAATGTTAAATATTATGTATTCTGACTTTTTTTTTCCCCCGGAGTCTTGTATATTTATAGTTTTCTATATAAACTGTAGTATCTTCATGAAGACCCAAGGCTCAAATTTACTGTCCTTAAAAACAATTCTCATAGGATTATTCTTTTCATGGTATTTTCTTCCATAATATCTCATTTTAAAAAGAAGTTCTTTATGAACTTAGTGTCCATTGTCATGCAATGTTTTTTTTTTTTTTCCATTCTTTTTCCCTGTAATTTTGGAATTTCTGGTCCTGGGAAGAATCAAACAAAATCTTAAGTTCTATGAGAACTTGGTTCATTGACAGATTTTGCTGAAGAAAGAAAAATTAAATTGGTAGTAAAATATAGTCTTCAAGTATACGTTTGAGAGTGCTTTTTTTTGTATTAGTTCTGCTGTCACTTCATTTCCTGTATTATATGTGATGTTTTTCCCCATTAAAATACCAGAGATAATGGAGATATTTTGCACTTTAGCCTTGATGAAAAGTACAAGATATGTTCAAAGCTTCCCTTATTTTTTTCTTATTTGTAGCCACATAAGTTTCAAGAATAACATGGCACACAGAACAATGGAAAAAAGTTTGTTTCCATTGGAAAATTATATCATTTTGGGTTGCCACATCAGTTTATAAATTTGGAGCTCTTTTAATTACACTCTGTAGAAGGTTAATAGAGCTTGAGCCCTGCTTTAATATGTAGTGAAAGATAATTCTGTAGAAAAACGTCAGCCAGTAGGGTAAAGTCATTCTACTGTTCTTAATTTTTATATTGAGGAACAATATTGGGTGTTTGGGAGCCAGAAAGCTTTGTTGACAGATCAGAAATAAGATTGACTTGGGTGTTATATTTCATCTCTCTCCAGACTCTAGGTATATTTCCAACTTTATATATCACAGTATTTAAAAAGACATGTTTGCATTGAGAAATTAACCCTAAAGGGTTTTCAATAGGGTGTAGACCTCCAGTACCTTTGTAACTGAAGTCTGTCTAGTCATTGTAAATATTTATCTGTCAGTTTTGACAGATTGGGGCGAGCTTGATGTTTTAAATCTTCAGCCCGGTATGAAAACTTAAAGGTATATATTCAATTTTTTACCATTTTATGGAAAATATTTAAAATCTGTTTTTACAGGGttttttttttttttttttGTAATCTGTGCCATGAAATTTGAAAACCACCAAAAATCAAGGGAACTTTTATATATTCAATTCCTTTTCTGGTGTAGTGTTAAAGTTGTATAGATTATTAATGCATGCCCACTGAATATAACCCTGGTTTTGTGATAAAACTGCTTAGATTTTGTTGATGACATTAGATTAGTAGTTGCATTGAATAACTAAATTCCCATTGTGATTAACTGAAATTTTGTCTTTAAGCAGAGAGTTATTTGTGACTATAAGCTTTGTGCTTAGAGAATGTATGTGTTTTTATCTGTCAGTATGGGAGGATATAAACTGCATCATTAGTGAAATTATTGGTTGTGTAATCCTTTGTGAAATATAATTCTAGGTATTTGA

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