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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL22L1P2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr4:69717504-69717828  UCSC
Strand -
Parental Sequence XM_003831927.3
Parental seq. overlap 307 bp
Parental seq. overlap (%) 49.3%
Genomic Region Intergenic
Retrocopy Summary RPL22L1P2, located on chr4:69717504-69717828, is a retrocopy of the parental gene RPL22L1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL22L1
Full Name N/A
Also known as -
Coordinate chr3:167879172-167883064
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL22P13
Chimpanzee Pan troglodytes RPL22L1P2
Gorilla Gorilla gorilla RPL22L1P2
Orangutan Pongo abelii RPL22L1P2
Gibbon Nomascus leucogenys RPL22L1P2
Green monkey Chlorocebus sabaeus RPL22L1P2
Crab-eating macaque Macaca fascicularis RPL22L1P2
Rhesus Macaca mulatta RPL22L1P2
Baboon Papio anubis RPL22L1P2
Golden snub-nosed monkey Rhinopithecus roxellana RPL22L1P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL22L1P2
CTGGATATCTCAGGAATGTTGTTCACATTGAATGCTTCAAGAATAAAATCACAGTTCTTTCTGAGAAACAGTTTTCTAAAAGGTATTTGAAATACCTTACCAAGAAATACCTTAAGAAGAGCAGTCTTCATGATTGGCTTCGAGTGGTTGCATCTGACAGGAGACTTATGAACTTTGTTACTTCCAGATTAGTCAAGAAGATGAAGCAGAGTCGGAGGACTAGGCAAAGGCTTCCCCTATAGGGCTTTGCTGATTAATAAAATAAATGAAGTATACGTGAGAAATACCAAGAAATTGGCTTTTAGTTTATCAGTGAATTAAAAAA
>XM_003831927.3
CGGCCTCAGCGCTCCTCCCGCTTTCTTTTCCGGGAGGCGACAATCTGACGCTCTCAGCGCGTGACGCAGCACGCTTTGATATAAATACAGACCGCGCGGCCGTAGCTTCCTCTCTGCTCTCGCGGCCGACTCGCAAGATGGCGCCGCAGAAAGACAAGAAGCCCAAGAGGTCAACCTGGAGGTTTAATTTGGACCTTACTCATCCAGTAGAAGATGGAATTTTTGATTCTGGAAATTTTGAGCAATTTCTACGGGAGAAGGTTAAAGTCAATGGCAAAACTGGAAATCTCGGGAATGTTGTTCACATTGAACGCTTCAAGAATAAAATCACAGTTGTTTCTGAGAAACAGTTCTCTAAAAGGTATTTGAAATACCTTACCAAGAAATACCTTAAGAAGAACAATCTTCGTGATTGGCTTCGAGTGGTTGCATCTGACAAGGAGACCTACGAACTTCGTTACTTCCAGATTAGTCAAGATGAAGATGAATCAGAGTCGGAGGACTAGGCAAAGGCTCCCCTTACAGGGCTTTGCTTATTAATAAAATAAATGAAGTATACATGAGAAATACCAAGAAATTGGCTTTTAGTTTATCAGTGAATAAAAAATATTATACTCTTGAA

Publications

PMID - Link Title