Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL7P29
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr10:35825593-35826423  UCSC
Strand +
Parental Sequence XM_003831322.4
Parental seq. overlap 770 bp
Parental seq. overlap (%) 87.9%
Genomic Region Intergenic
Retrocopy Summary RPL7P29, located on chr10:35825593-35826423, is a retrocopy of the parental gene RPL7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL7
Full Name N/A
Also known as -
Coordinate chr8:69829356-69833184
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL7P37
Chimpanzee Pan troglodytes RPL7P29
Gorilla Gorilla gorilla RPL7P33
Orangutan Pongo abelii RPL7P27
Gibbon Nomascus leucogenys RPL7P34
Green monkey Chlorocebus sabaeus RPL7P8
Crab-eating macaque Macaca fascicularis RPL7P26
Rhesus Macaca mulatta RPL7P26
Baboon Papio anubis RPL7P37
Golden snub-nosed monkey Rhinopithecus roxellana RPL7P44
Marmoset Callithrix jacchus RPL7P29
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL7P29
GTTCCTCTTTTCTGGCTAGAACCATGGAGGGTGTTGAAGAGAAGAAAAAGGAGGTTCCTGCTGTGCCAGAAACCTTAAGAAAAAGGGAAGGAATTTCGCAGAGCTGAAGATCAAGCGCCTGAGAAAGAAGTCTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAACTTATCTATGAGAAAGCAAACCGCTATCACAAGGAATGTAGGCAGATGTACAGAACTGAAATTCGAATGGCGAGGTTGGCAAGAAAAGCTGGCAACATCTATGTACCTGCAGAACCCAAATTGGCGTTTGTCATCAGGATCAGAGATATCACTGGTGTGAGCCCAAAGGTCTGAAAGGTGTTGCAGCTTCTTTGCTTTCATCAAATCTTCAATGGAACCTTTGTGAAGCTCAACAAGGCTTCAATTAACATGCTGAGGATTATAGAACCATATATTGCATGGGAGTACCCAAATCTGAAGTCAGTAAATGAAGTAATCTACAAGCGTGGTTATGGCAAAATCAATAAGAAGGGAATTGCTTTGACAGATAACACTTTGATTGCTGTGTCTCTTAATAAATATGGCATCATCTGCATGGAGGATCTGATTCATGAGATCTATACTGTTGGAAAGTGCTTCAAAGAAGCGACTTCCCATGGCCCTTCAAATTATCTTCTCCACGAGGTAGAAAGAAGAAAAAGACCACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAGCGAGGACCAGATTAACAGTCTTATCAGAAGAACGAACTAAGGTGTCTACCATGATTATTTTTCTAATCTGGCCAGTTAATAAACAGTATGGGCTCTCAAACTGAAA
>XM_003831322.4
TCTCGCGAAGTCTTTAAGTGGACAGTACGCATGCGCCAACTTCCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGAAGAAGGAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAGGAATTTCGCAGAGCTGAAGATCAAGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCAAAGCACTATCACAAGGAATATAGGCAGATGTACAGAACTGAAATTCGAATGGCGAGGATGGCAAGAAAAGCTGGCAACTTCTATGTACCTGCAGAACCCAAATTGGCGTTTGTCATCAGAATCAGAGGTATCAATGGAGTGAGCCCAAAGGTTCGAAAGGTGTTGCAGCTTCTTCGCCTTCGTCAAATCTTCAATGGAACCTTTGTAAAGCTCAACAAGGCTTCGATTAACATGCTGAGGATTGTAGAGCCATATATTGCATGGGGGTACCCCAATCTGAAGTCAGTAAATGAACTAATCTACAAGCGTGGTTATGGCAAAATCAATAAGAAGCGAATTGCTTTGACAGATAACGCTTTGATTGCTCGATCTCTTGGTAAATACGGCATCATCTGCATGGAGGATTTGATTCATGAGATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATTGTCTTCTCCACGAGGTGGAATGAAGAAAAAGACCACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAGGGAGGACCAGATCAACAGGCTTATTAGAAGAATGAACTAAGGTGTCTACCATGATTATTTTTCTAAGCTGGTTGGTTAATAAACAGTACCTGCTCTCAAATTGAAA

Publications

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