Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102122953P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr6:34702049-34703742  UCSC
Strand +
Parental Sequence XM_005562465.2
Parental seq. overlap 967 bp
Parental seq. overlap (%) 81.3%
Genomic Region Intragenic (SLC45A2)
Retrocopy Summary LOC102122953P1, located on chr6:34702049-34703742, is a retrocopy of the parental gene PSMC6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PSMC6
Full Name N/A
Also known as -
Coordinate chr7:116820908-116843695
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PSMC6P1
Chimpanzee Pan troglodytes PSMC6P1
Bonobo Pan paniscus PSMC6P1
Gorilla Gorilla gorilla PSMC6P4
Orangutan Pongo abelii PSMC6P1
Gibbon Nomascus leucogenys PSMC6P1
Green monkey Chlorocebus sabaeus PSMC6P1
Rhesus Macaca mulatta PSMC6P2
Baboon Papio anubis PSMC6P2
Golden snub-nosed monkey Rhinopithecus roxellana PSMC6P1
Marmoset Callithrix jacchus PSMC6P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102122953P1
CGCTTCTCATCATGGCAGACCCTAGAGATAAGATGTTTCAGGACTACTGCAAGAAGCTGCCGGAGTGCATGGAGATGGACGGCCATCTTAAGGAGCTAAGGAAACAATTCAAAGAATTTACCAAGCCATATGAAAAGCCTGAAAATGATCTGAAGGCCCTAAAAAGTGTTGGGCAGATTGTGAGTAATGTGCTTAAACAATTAACAGAAGAACAATTCATTGTTAAAGCTGTAGAGGGACCAAGACATGTTGAGAGTTGTTGTCGACAGCTTCACAAAAGTAGCTGAAGCCAGGAACAAGAGTTGCTTTGGATAGGACTATACTAACTATCATGAGATATTTACCAAGAGAGGTGGAGCCACTGATTTATAACCTGTCTCATGAGGATCCTGGGATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAATAGATGCAGGAATTGAGGGGTTACCACTTAAAAACCCAGTTATTCCAGCATGTAGGAATAATACCTTTAAAAGGCTGTTTGTCATGTGGACCACCATAAACAGGAAAAACACTCTTGGCACACAAGCTATTGTTAGCCAGCTGAACTGCAATGcAGGACTGCAATTTCTTAAAGGTTGTATCTAGTCCTATTGTAGACAAGTACGCTGGTGAAAGTGCTCATTGGATCAGAGAAATGTTTAATTATGCCAGGGACCATCCACCATGCATCATTTTTATGGATGCAATAGATGCTATTGATGGTTGTCAGTTTTCCAAGGGTACTTCAGCTGACAAAGAGATTCGGATAACTTTTTGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATAATCATGGCTACCAACAGACCAAATACACTGGATCTTGCTTTGCTGCATCCAGGAAGATTAGATAGAAAAAAAAATACATATTGATTTGCCAAACGAACAAGCAAGGTTAGACATATTGAAAATCCATGCAAGTCCCATTACAAAGCATGGTGAAATTGATTATGGAGCAATTGTGAAGTTTTCAGATGACTTTAGTGGAGGAGACCTGAGAAATGTTTGTACTGAAGCAGGTATGTTTGCAATTCATGCTGATCA
>XM_005562465.2
CCTCGCCCCGCCCCTTCCCCCGCCCGGACGGCCATGGCCATTCCCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCGCAAGAAGCTGCTTGAGCACAAGGAGATCGACGGCCGTCTTAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGTACGAAAAGTCTGAGAATGATCTGAAGGCCCTACAAAGTGTCGGGCAGATTGTGGGTGAAGTGCTTAAACAGTTAACTGAAGAAAAATTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGTGGGTTGTCGTCGACAGCTTGACAAAAGTAAGCTGAAGCCAGGAACAAGAGTTGCTTTGGATATGACTACACTAACTATCATGAGATATTTGCCAAGAGAAGTGGATCCATTGGTTTATAACATGTCTCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATCCGGGAATTAAGAGAGGTGATAGAATTACCTCTTACAAACCCAGAGTTATTTCAGCGTGTAGGAATAATACCTCCAAAAGGCTGTTTGTTATATGGACCACCAGGTACGGGAAAAACACTCTTGGCACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTATCTAGTTCTATTGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCCAGAGACCATCAACCATGCATTATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGATTCAGAGAACGTTAATGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATGATCATGGCTACAAACAGACCAGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTTGCCAAATGAACAAGCAAGGTTAGACATACTGAAAATCCACGCAGGTCCCATTACAAAGCATGGTGAAATAGATTATGAAGCAATTGTGAAGCTTTCAGATGGCTTTAATGGAGCAGACCTGAGAAATGTTTGTACTGAAGCAGGTATGTTCGCAATTCGTGCTGATCATGATTTTGTAGTACAAGAA

Publications

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