Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC102125550P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr15:38873683-38875336  UCSC
Strand -
Parental Sequence XM_005583750.1
Parental seq. overlap 525 bp
Parental seq. overlap (%) 62.6%
Genomic Region Intergenic
Retrocopy Summary LOC102125550P1, located on chr15:38873683-38875336, is a retrocopy of the parental gene LOC102125550. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102125550
Full Name N/A
Also known as NME2
Coordinate chr16:36579151-36584383
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NME2P3
Chimpanzee Pan troglodytes LOC107969275P2
Bonobo Pan paniscus LOC100979710P2
Gorilla Gorilla gorilla NME2P2
Orangutan Pongo abelii NME2P2
Gibbon Nomascus leucogenys LOC100592128P2
Green monkey Chlorocebus sabaeus NME2P1
Rhesus Macaca mulatta NME2P1
Baboon Papio anubis LOC101016759P2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104680296P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102125550P1
GCCACCTGGCCCAACCAGCTTCCTGGACCATGGCCAACCTGAGTGCACCTTCATCACCATCAAGCCAGACAGTGTGCAGCGTGGCCTGGCTGGCAAGATCATCGAGCGCTTTGAGCAGAAGAGATTCCACCTCATGGCCATGAAGTTCCTCTGGGCCTCTGAGAACACCCGAAGCAGCACTACATTCACTGGAAAGACCGCTCATTCTTCCCCAGGCTGGCGAAGTACAGGAAATCAGGGCCTGTCTTGGCCATGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGCCGAGTGACACCTGGGGAGACCAATCCAATGGATTCTAAGCCACACACCATTTGTGGGAACTTCTGTATTCAGGTGGGGTGATGCATCATTCATGGCAGTGGCTCAGTAATAAGTGCTGAAAAATAAATCAGCCAgTCAGCCTATGGTTTAAGCCCAAAGAACCAGCTGACTACAGATCTTGTGCTTATGGCTGGGTCTATGCATGATAGATGGATACAGCAGCAGTCTCTTTCAAGGACTGTTTGGAGTGTCCTTGGACATAGCTCTTCATTCCACTGACTTAGAAGCAGAAGCAACAAGATTGATCATTCTTTTCTAGAGCATATTTACCCATAAAGC
>XM_005583750.1
GGCGAGGGCGCGCCCCGGCTGGGCGTGGACACGGTTCTCGGGCCGCGTCCGGCCGGGCGGGTGGGGCGTTCCTGCGGGTTGAGAGGCTAGGTCCTCCGGGGTGTGGCCACGTCGCGCTCCGCCCCGCGCCCCTCCTCCGCTGCCAGCTCCCGGGTGTGGTGGTCCCTCCAGCTCTCTGCTCTCGCAGCGCAGCGCCGCCACCCGGCCCCTCCAGCTTCCCGGACCATGGCCAACCTCGAGCGCACGTTCATCGCCATCAAGCCGGACGGCGTGCAGCGCGGCCTGGTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGGTTCCGCCTCGTGGCCATGAAGTTCCTCCGGGCCTCTGAGGAACACCTGAAGCAGCACTACGTTGACCTGAAAGACCGCCCGTTCTTCCCCGGGCTGGTGAAGTACATGAACTCGGGGCCGGTTGTGGCCATGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGTGATGCTTGGGGAGACCAATCCAGCAGATTCTAAGCCAGGCACCATTCGTGGGGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGACTCAGTAAAAAGTGCTGAAAAAGAAATCAGCCTATGGTTTAAGCCTGAAGAACTGGTTGACTACAAGTCTTGTGCTCATGACTGGGTCTATGAATAAGAGGTGGACATAGCAGCAGTCTCCTTCAGTACGGCGTGGTGTGTCCCTGGACACAGCTCTTCATTCCACTGACTTAGAGGCAACAGGATTGATCATTCTTTTATAGAGCATGTTTGCCAATAAAGTTTTTGGAAGCTGGA

Publications

PMID - Link Title