Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPSAP56
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr15:31823602-31824620  UCSC
Strand +
Parental Sequence XM_008951525.3
Parental seq. overlap 926 bp
Parental seq. overlap (%) 84.8%
Genomic Region Intergenic
Retrocopy Summary RPSAP56, located on chr15:31823602-31824620, is a retrocopy of the parental gene RPSA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPSA
Full Name N/A
Also known as -
Coordinate chr3:39311321-39317083
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPSAP55
Chimpanzee Pan troglodytes RPSAP56
Gorilla Gorilla gorilla RPSAP55
Orangutan Pongo abelii RPSAP53
Gibbon Nomascus leucogenys RPSAP20
Green monkey Chlorocebus sabaeus RPSAP49
Crab-eating macaque Macaca fascicularis RPSAP32
Rhesus Macaca mulatta RPSAP33
Golden snub-nosed monkey Rhinopithecus roxellana RPSAP26
Marmoset Callithrix jacchus RPSAP44
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPSAP56
ACAGAGGGGTCAAAATGGCATTGTTCTGGATTCCTGTTGTAACTTAAAGGGAAACTTTCACAATGTCTgGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCTCTTAGGTGGCACCAATCTTGACTTCCAGATGGAACGGTACATCTGTAAAAGGAAAAGTGATGGCATCCACATCATAAATCTGAAGAGGACCTGGGAGAAGCTTCTGCTGTCAGCTCGTGCCATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTCATATCCTCCAGGAATACTGGCCAGAGGGCCATGCTGAAGTTTGTTGCTGCCACAGGAGACACTCCAATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCTTGTGGTTACTGATCCCAGGGATGACCACCAGGCTCTCATAGAGGCATCTTATGTTAACCTACCTACCATTGCTCTGTGTAACACAGATTCTCCTTTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTTGCAAAGTTCTGCACATGTGTGGCACCATTTCCTGTGAACACCTGTGGGAGGTAATGCCTGATCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAAAGCAAGCTGCTGTTGAAAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCTAGCTCCTGAGTTCACTGCTACTCAGCCTAAGGTTGCAGGCTGGTCTGAAGGAGTGCAGGCACCCTCTGTGCCTATTCAGCGGTTCCCTACGGAAGACTGGAGTGCTCAGCCTGCCACGGAAGACTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGAATGGTCTTAAGCTGTTCTTGCACAGGCTCCTAAGCAACATGGAAATAAGGTTGATGGAAAATAAACATCGGTTTCTAAA
>XM_008951525.3
TTCTTTGCCATTGGCTGACAACGGAGTACATAAGGACGTCATTTCCTGCCGCCTGTCTTTTCCGCGCTACCTGCAGAGGGGTCCATACGGCGTTGTTCTGGATTCCCGTCGTAACTTAAAGGGAAACTTTCACAATGTCCggagcccttgatgtcctgcaaatgaaggagGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCACTTAGGTGGCACCAATCTTGACTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGATGGCATCTATATCATAAATCTGAAGAGGACCTGGGAAAAGCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCTTGTGGTTACCGACCCCAGGGCTGACCACCAGCCTCTCACGGAGGCATCTTATGTTAACCTACCTACCATTGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTCTGCGCATGCGTGGCACCATTTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTGTACTTCTACAGAGATCCTGAAGAGATTGAGAAAGAAGAGCAGGCTGCTGCTGAGAAGGCAGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCAGCTCCTGAGTTCACTGCTACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAATTCCCTACTGAAGACTGGAGCGCTCAGCCTGCCACGGAAGACTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTAAGCAGCATGGAAAAATGGTTGATGGAAAATAAACATCAGTTTCTAAAA

Publications

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