Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SALL4P4
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr14:2815288-2817237  UCSC
Strand +
Parental Sequence XM_003815274.4
Parental seq. overlap 1617 bp
Parental seq. overlap (%) 30.9%
Genomic Region Intergenic
Retrocopy Summary SALL4P4, located on chr14:2815288-2817237, is a retrocopy of the parental gene SALL4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SALL4
Full Name N/A
Also known as -
Coordinate chr20:48130387-48150569
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SALL4P9
Gorilla Gorilla gorilla SALL4P4
Orangutan Pongo abelii SALL4P4
Gibbon Nomascus leucogenys SALL4P5
Green monkey Chlorocebus sabaeus SALL4P4
Crab-eating macaque Macaca fascicularis SALL4P4
Rhesus Macaca mulatta SALL4P4
Baboon Papio anubis SALL4P3
Golden snub-nosed monkey Rhinopithecus roxellana SALL4P3
Dog Canis familiaris SALL4P1
Kuhl's pipistrelle Pipistrellus kuhlii SALL4P2
Chimpanzee Pan troglodytes Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SALL4P4
CCAAGCACAAGTGTAAGTACTCTAGCAAGGTTTTTGGGACTGATAGCTTCTCATGGATCCACCTCTGCTCCCACACTGGAGAGAGACCCTTCGTGTGCTATGTCTGTAGTCATCACTTCACCACCAAGGGAAACCTCAGGGTACAGTTTCACAAACATCTCCAAGAGAAGGTGAACCCCCAGTTGTTTGCTGAGTTCCAGGAAAAAATGGCAACAGGCAATGGCAACCCATATGCACTCTGTACCTGCCCCCATCAATGAATCGAGTCTCTCTTTAAACAGCAAACTTGTTCTTGTAACTTCCTCTCTAAGGCTACCTCAGAATCTCTCTTCAGAGACTAACCCGAAGAACCTCATGGATGGCCTGTTGCCCAATTACCTGTAGCCCAGTCCTTCTGCAGAAAGTGAGGGCAGGCCTACACTCCTTGAGGTAAGGACAAACAATAATTCACCAAGTATTGGTGGCTTCTAAGTGAGTGGGATCCCCGGCCAGGACCAGAGACCCTAAAATTGCTGTAGCTGTTTGAGAACATCCACAATGCCGCCACTGGCTTCATTTTCTACTGATTCCTAAGCTCTCTCAAAATGTATTACTGCACATGCACCCACACACCAGGGAGAGACTATTCCAGTATAAGATTTGTGGCTGAGCTTTTTCTACCAAAGGCAACTTGCAGATGCACCTTGGGGTTCACTGAACCAACACACCCATAAAGAGGCAGCATTCATGCCTCATCTGCCAGAGTTACCAATGCCGTGATATTGCAACAGTATATTCGGATGCACACGGGCAGTCAGATTCCCAATATTCCCTTGCCAGAGGATCCCTGTGACCTTATGATCCTGATCCAATGATGGTCAGTGAGGATGGCAGTACAAGTGCCATCTGCTATGATGATGTCCCCAAAAGCACCGATGTAGAAGTCAGCTCCCAGGAGGGCCCAAGCAGCTCCTCAAAGATCCCCGTACCTCTTTCCATGACGGCTTCCTTAGATGCCCCAGGTAGGGGGAGTGGGTCCTATCCCTTTTGGCCTGCAGTGCCAGAGCAGCTGAAAAATGGTTCAGTGGAGAGCAATGGCTTGACCAACCACTCATCCTCACTGAAATGAGACTAGGAGTGTGAGAACCAAAGTCCAGACACCATGGAAACTAGGTCCTTCCAGGTACTCTCTGGCCAATAGTGAGGCACAAATCATCAAGTCAATGTCTCCTGATGCTGGGGGCAAATCAGAGAGCTTTGAGAACAGATGCAGGGATGGAAGGTCGGAGCAGGCTCTCTTCAACGTTTATCTGAGCCCAGCCAACCTATGTCAAACTTGAAGTTCCAGGTATATTTGTAGGACCCTCAATCTTGTCTCCAGGGATGACCCCTTTGTTAGAGGCCCAGCTACACTGACAGGTCAAGCAACACGGCTGCACCCAGTGTGGGAAGAACTTCCTGTCCACTAGTCTTTTAAGATTCACAGACAGACTCACACTGGAGAGAAGCCTTTTGTATGCAACATTTGTGGGACAGCTTTTACCACCAAAGGCAACTTGAGGGTCTACTATATGACACATGGGGTGAACAATAACTCAGCACACCATGGGAGGAAGCTGGTCCTGGAGAACACCATGTCTCTGTTAGGTACAAAAGGAAAAAGAGTCTCAGAAATGTTTCCTAAGGAAATCCCAGCCCCTTTGGTGAATGTGGACACTGTTGTAAGGAATCAGTATACCCCCACACTTGACTGTGGTCTGGCAGTGAAAACCAGTGAGCTCTCTCTGATCCAGCGTAGCTGTATTCCTACCCTCCTGGTTTCCCTGGAGGCTGTCTCCATCATGAATAACACCACCATCTCCAAGATGATGGCTCCCAATCAGGTGTCATTGCGGTTGTGGAAAAACCAGGTGCTATTGACAGCATTCCCAAACACCAGTTCCTTTACTTCCTGGAAGAAAACAAGGTTGC
>XM_003815274.4
TAATAATTACTGGGACATGCGCGTTCCGGCCGAAGGGGGGTAAATTTCCCAACTCCAGGAATTTGTGGCGGAGAGGGCAAATAACTGCGGCTCTCCCGGCGCCCCGATGCTCGCACCATGTCGAGGCGCAAGCAGGCGAAACCCCAGCACATCAACTCGGAGGAGGACCAGGGCGagcagcagccgcagcagcagACCCCGGAGTTTGCAGATGCGGCCCCAGCGGCGCCCGCGGCGGGGGAGCTGGGTGCTCCAGTGAACCACCCAGGGAATGACGAGGTGGCGAGTGAGGATGAAGCCACAGTAAAGCGGCTTCGTCGGGAGGAGACGCACGTCTGTGAGAAATGCTGTGCGGAGTTCTTCAGCATCTCTGAGTTCCTGGAACATAAGAAAAATTGCACTAAAAATCCACCTGTCCTCATCATGAATGACAGCGAGGGGCCTGTGCCTTCAGAAGACTTCTCCGGAGCTGTACTGAGCCACCAGCCCGCCAGTCCCGGCAGTAAGGACGGTCACAGGGAGAATGGCGGCAGCTCAGAGGACATGAAGGAGAAGCCGGATGCGGAGTCTGTGGTGTACCTAAAGACAGAGACAGCCCTGCCACCCACCCCCCAGGACATAAGCTATTTAGCCAAAGGCAAAGTGGCCAACACTAACGTGACCTTGCAGGCACTACGGGGCACCAAGGTGGCGGTGAATCAGCGGAGCGTGGATGCACTCCCTGCCCCCGTGCCTGGTGCCAACAGCATCCCGTGGGTCCTCGAGCAGATCTTGTGTCTgcagcagcagcagctacagcagATCCAGCTCACCGAGCAGATCCGCATCCAGGTGAACATGTGGGCCTCCCACGCCCTCCACTCAAGCGGGGCAGGGGCCGACACTCTGAAGACCTTGGGCAGCCACATGTCTCAGCAGGTTTCTGCAGCTGTGGCTTTGCTCAGCCAGAAAGCTGGAAGCCAAGGTCTGTCTCTGGATGCCTTGAAACAAGCCAAGCTACCTCACGCCAACATCCCTTCTGCCACCAGCTCCCTGTCCCCAGGGCTGGCACCCTTCGCTCTGAAGCCGGATGGGACCCGGGTGCTCCCGAACGTCATGTCCCGCCTCCCGAGCGCTTTGCTTCCTCAGGCCCCGGGCTCGGTGCTCTTCCAGAGCCCTTTCTCCACTGTGGCGCTAGACACATCCAAGAAAGGGAAGGGGAAGCCACCGAACATCTCCGCGGTGGATGTCAAACCCAAAGACGAGGCGGCCCTCTACAAGCACAAGTGTAAGTACTGTAGCAAGGTTTTTGGGACTGATAGCTCCTTGCAGATCCACCTCCGCTCCCACACTGGAGAGAGACCCTTCGTGTGCTCTGTCTGTGGTCATCGCTTCACCACCAAGGGCAACCTCAAGGTGCACTTTCACCGACATCCCCAGGTGAAGGCAAACCCCCAGCTGTTTGCCGAGTTCCAGGACAAAGTGGCAGCCGGCAATGGCATCCCCTATGCACTCTCTGTACCTGACCCCATAGATGAACCGAGTCTTTCTTTAGACAGCAAACCTGTCCTTGTAACCACCTCTGTAGGGCTACCTCAGAATCTTTCTTCGGGGACTAATCCCAAGGACCTCACGGGTGGCTCCTTGCCCGGTGACCTGCAGCCTGGGCCTTCTCCAGAAAGTGAGGGTGGACCCACACTCACTGGGGTGGGACCAAACCATAATTCCCCAAGGGCTGGTGGCTTCCAAGGGAGTGGGACCCCTGAGCCAGGGTCAGAGACCCTGAAATTGCAGCAGCTGGTGGAGAACATTGACAAGGCCACCACTGATCCCAACGAATGTCTCATTTGCCACCGAGTCTTAAGCTGTCAGAGCTCCCTCAAGATGCATTATCGCACCCACACCGGGGAGAGACCGTTCCAGTGTAAGATCTGTGGCCGAGCCTTTTCTACCAAAGGTAACCTGAAGACACACCTTGGGGTTCACCGAACCAACACGTCCATTAAGACGCAGCATTCGTGCCCCATCTGCCAGAAGAAGTTCACTAATGCCGTGATGCTGCAGCAACATATTCGGATGCACATGGGCGGTCAGATTCCCAACACGCCCCTGCCAGAGAATCCCTGTGACTTTACGGGTTCTGAGCCAATGACCGTGGGTGAGAACGGCAGCACCGGCGCTATCTGCCATGATGATGTCATCGAAAGCATCGATGTAGAGGAAGTCAGCTCCCAGGAGGCTCCCAGCAGCACCTCCAAGGTCCCCACGCCTCTTCCCAGCATCCACTCGGCATCACCCACGCTAGGGTTTGCCATGATGGCTTCCTTAGATGCCCCAGGGAAAGTGGGTCCTGCCCCTTTTAACCTGCAGCGCCAGGGCAGCAGAGAAAACGGTTCCGTGGAGAGCGATGGCTTGACCAACGACTCATCCTCGCTGATGGGAGACCAGGAGTATCAGAGCCGAAGCCCAGACATCCTGGAAACCACATCCTTCCAGGCACTCTCCCCGGCCAATAGTCAAGCCGAAAGCATCAAGTCAAAGTCTCCCGATGCTGGGAGCAAAGCAGAGAGCTCCGAGAACAGCCGCACTGAGATGGAAGGTCGGAGCAGTCTCCCTTCCACGTTTATCCGAGCCCAGCCGACCTATGTCAAGGTTGAAGTTCCTGGCACATTTGTGGGACCCTCGACATTGTCCCCAGGGATGACCCCTTTGTTAGCAGCCCAGCCACGCCGACAGGCCAAGCAACATGGCTGCACACGGTGTGGGAAGAACTTCTCGTCTGCTAGCGCTCTTCAGATCCACGAGCGGACTCACACTGGAGAGAAGCCTTTTGTGTGCAACATTTGTGGGCGAGCTTTTACCACCAAAGGCAACTTAAAGGTTCACTACATGACACACGGGGCGAACAATAACTCAGCCCGCCGTGGAAGGAAGTTGGCCATCGAGAACACCATGGCTCTGTTAGGTACGGACGGAAAAAGAGTCTCAGAAATCTTTCCCAAGGAAATCCTGGCCCCTTCAGTGAATGTGGACCCTGTTGTGTGGAACCAGTACACCAGCATGCTCAATGGCGGTCTGGCCGTGAAGACCAATGAGATCTCTGTGATCCAGAGTGGGGGGGTTCCTACCCTCCCGGTTTCCTTGGGGGCCACCTCCGTTGTGAATAACGCAACTGTCTCCAAGATGGATGGCTCCCAGTCGGGTATCAGTGCAGATGTGGAAAAACCAAGTGCTACTGACGGCGTTCCCAAACACCAGTTTCCTCACTTCCTGGAAGAAAACAAGATTGCGGTCAGCTAAGGGAGAACTTGCGTGGAAGGAGCAATGCAGACACAGTGAAATCTCTAGAATCTGCTTTGTTTTGTAAGAACTCATCTCCTCCTGTTTTCTTTTTCTTACTGATATGCAAATGATGTTTACTACGATGGTTGTGACCACAACCTCAGGCAAGTCCTACAATCACGATTGTTGCTATGCTGCTTTGCAAAAAGTTGAAAAAATAAAATGCATACCAAAACAAATACAGACTCttttttttttttgagatggagtctcgctctatcacccaggctggagtgcagtggcatgatctcggctcactgcaacctccccattctgggttcaagtgattctcctgccttagcctccagagtagctgggattacaggcaggtgccaccacgcccagcttattttgtattttgagtagagactgggtttcaccatgttggtcaggctggtctcgaactccggacctcgtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagctaccacgcctggcACttttttttttttttttttctaattttGGAAAGAAGCGGGTCTTGCAAAGTAGCTTTGTTACTTGTAACAGACGTATACATAGAACCTTTGTACAACCTAGAATGACTTTTTCCAAAGACTGTTACCTATTTCAAGGTAGAATCGTTGGAACTTACTGAACAACAGTGGAAAAGACAACTACACAGCCTCATTGAGGGGAGAGGGGTACTGTATACTTACTGGTAACTGGACACGGGTAAAAGGACAAGGTCTGTCATCTCTTTAGGGACCTGTTTTATATGCCCCAACCCTGTCCCCATCTTATTATTTGTTTTTTTTTGAATGTACTTAAAAAAGGAACAACAAAAAACTAGGGTTGTAGAATTATAAAACTGCTTCAACCTTAGAACCTTAAGTAGGAGGCCCTCAAATGGACTTACGTTAGTCCTTAGGGAGTCAATGTGTGTGTTGCTGCTTATTTAAATACAGTTCAGTTGGAGCCCCGAGAGTGCCAATGTTTTCCCCACACCTCTTGGATGCCTTCCTCTTCCCAAACCCCAGAAGAGGTGGGCACCTGAGCGGGGAATCTCAGGTGACTTAGTTTGCCAGTGCCTACTCTATTGAAGAACTGGGTTTTCATGCTCGAGAAGAAACTCGTGGAAGGGCGTGTTTCCCCTCACAGGTTCACATACTGATTGCTTTTGTTGAATTTCCTTGGTGCGACTTATGCCAAGTAATTATGAAGATTTTTTGTTTTGTTTTCTTTTCTTGCTGAATATTTCATGAAGGCTACGAAGTTAGAACAGGCACGTCCTGGGTGTGAAAGCTttaatttatctacctcatttattttttatttttttGTAGCCATAGTGTCTATTTTCCTATTTTAAGACCGCTGAAGTATTCCCAGGCCCTGTCTAAAACCTAAGAGTTGATGTATTGGTGGGAAGAGGTGAACGTTCAAGATGATTTTGTGATGCCTTTTTTTTTTTGTAGTTTCCTTTGTAAATGTGATATTGAGCAAACGAAACATTGCTCTTGGTTTAACAAGAAAGGTTTAACAAGAAAGAAAGAAAAAAACTCTAATTTCTGGGAGAAAAGTCTTTCCCCTCTATGTGGAAGGTCCTGACGGAAATATGCATCCAAGACGATTAGCCAAAGTGTTGTCTCTTCATCGTTGCACCTGACTTTAGGATTCCGCCCCCCTCTTTTTTTTTTTTGCCAAGTTGTGCCTTTCCTTCTGGAATTGTAAGTGAACACGATAATAGTACCTGTTTACACTGTGAAGTGGATATTGTTACAGAAAACACACCAGTGGCTTTCTCACTGTTGAGCTAATAATGCCTTGTGAATGTATGATCTACGGAGAAACCCCTGTAGTTGTACCTGCTGATGCTGTCTGTCTGTTGGAAAATAAAATTTGAATGTTTTTTTTTCTCA

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