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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102130365P5
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr14:12207651-12207946  UCSC
Strand +
Parental Sequence XM_005575820.2
Parental seq. overlap 266 bp
Parental seq. overlap (%) 31.6%
Genomic Region Intergenic
Retrocopy Summary LOC102130365P5, located on chr14:12207651-12207946, is a retrocopy of the parental gene LOC102130365. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102130365
Full Name N/A
Also known as NULL
Coordinate chr13:53273611-53274678
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS2P77
Chimpanzee Pan troglodytes RPS2P26
Bonobo Pan paniscus RPS2P27
Gorilla Gorilla gorilla RPS2P30
Orangutan Pongo abelii LOC100444622P27
Gibbon Nomascus leucogenys RPS2P8
Green monkey Chlorocebus sabaeus RPS2P2
Baboon Papio anubis RPS2P42
Golden snub-nosed monkey Rhinopithecus roxellana LOC104663251P24
Marmoset Callithrix jacchus RPS2P37
Rhesus Macaca mulatta Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102130365P5
GCTGGCATCATCTCAGCCATGTTGCCCAGGAAGGTGCTGATGATGGCTGGTATCGATGACTGCTACACCTCAGCCAGGGGCTGCACTGCCACTCTGGGCAACTCTGCCAAGGCCAGCTTTGATGTCATCTCCAAGACCTACAGCTACCTGACCTGACTTCTAGAAGAATACTGTATTCACCAAGTCTCCCTACCAGGAATTCACTCGCCATCTTGTCAAGACCCACACCAGAGTCTCTGTGCAGAGGACCCAGGTGCCAGCTGTGGCTACAACATAGTGTTTTTATACAAGAAAAA
>XM_005575820.2
TCCTGGGATGGGGAACCCCGGTGGCTTCTGCGGAGGTTTCGGCAGTGGCATccggggccggggttgcggccatggaccgggctgggccgaggccgcggAGCTCGCGGAGGCAAGGCCGAGGATAAGGAGTGGATGCCCGTCACCAAGCTGGGCCGCTTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTACCTCTTCTCCCTGCCCATTAAGGAATCTGAGATCATTGACTTTTTCTTGGGGGCCTCTCTCAAAGACGAGGTTTGGAAGATTATGCCGGTGCAGAAGCAGACCCCTGCTAGCCTGAGCACCAGGTTCAAGGTGTTTGTTGCTATTGGGGACTGCAATGGCCACGTTGGCCTGGGTGTTAAGTGCTCCAAAGAGGTGGCCACCACCATCCGTGGGGCCATCATCCTGGCCAAACTCTCCATTGTCCCCGTTCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGGCCCACACCGTCCCTTGCAAAGTGACAGGCAGCTGGGGCACTGGCATCGTCTCAGCGCCTGTGCCCAAGAAGCTGCTCATGATGGCTGGTATCGATGACTGCTACACCTCAGCCTGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACTTTTGATGCCATCTCTAAGACCTACAGCTACCTGACCCCTGACCTCTGGAAGGAGACTGTATTTACCAAGTCTCCCTATCAGGAATTCACTGACCACCTTGTCAAGACCCACACCAGGGTCTCCGTGCAGCGGACCCAGGCTCCAGCTGTGGCTACAACATAGGGTTTTTATACAAGAAAAATAAAGTGAATTCAGCCTGTTActgt

Publications

PMID - Link Title