Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SNRPCP12
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr18:11293197-11293692  UCSC
Strand -
Parental Sequence XM_003808535.3
Parental seq. overlap 440 bp
Parental seq. overlap (%) 52.4%
Genomic Region Intragenic (LPIN2)
Retrocopy Summary SNRPCP12, located on chr18:11293197-11293692, is a retrocopy of the parental gene SNRPC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SNRPC
Full Name N/A
Also known as -
Coordinate chr6:34324127-34340526
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SNRPCP4
Chimpanzee Pan troglodytes SNRPCP15
Gorilla Gorilla gorilla SNRPCP14
Orangutan Pongo abelii SNRPCP8
Gibbon Nomascus leucogenys SNRPCP4
Green monkey Chlorocebus sabaeus SNRPCP4
Crab-eating macaque Macaca fascicularis SNRPCP8
Rhesus Macaca mulatta SNRPCP8
Baboon Papio anubis SNRPCP7
Golden snub-nosed monkey Rhinopithecus roxellana SNRPCP8
Marmoset Callithrix jacchus SNRPCP17
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SNRPCP12
GTGACTACTGCAACACACACCTCATCCATGACTCTCCATTTATGAGAAAGACATATTGCAGTGGTAGGAAACAGAGACAGAATGTAAAGATTACTATTAGAAATGGATGGAAGAACAGGCTCAGAGCCTGACTGACAAAATAAGGGTTGCATTTCAACAAGGAAAGATACTTCCTACTTCAATCTCTGTTCCCCGCCGGCAGGGACAATGATACCACCTCCCTCCAGTCTTCTGGGTCCTCCTCACCCTGGTATGATGCCAGCACCCCACACGGGGCCCTCCTCCTGGGATGATGCCAGTGGGACCTGCTCCTGGAATGAGGCTGCCCATGGGAGGCCACATGCCAATGATGCCTGGGCCCCCAATGATGAGACCTCTTGCTTGTCCCATGATGGTGCCCACTTGGCCCAGAATGACTCGAGCAGACAGAAAGGATAGAGGGAAGGCCTCCCTATATCAGTCTTATATTGCTTGCTCTGCTTCACCAGGAGATCAC
>XM_003808535.3
CCCTCGCTCGGCTGCTGGAGGCGAGGGCTTCGGAAATCTTCATGCTAGTCTCGTGGGGTTCCGCGGTGTCGTCGCTGGCTGTGCGCGTCATTTCCGGGCGTCACGTAACGGAGTGGCCAACGGCCTGCAGAGCAACATGCCCAAGTTTTATTGTGACTACTGCGATACATACCTCACCCATGACTCTCCATCTGTGAGAAAGACACACTGCAGTGGAAGGAAACACAAAGAGAATGTGAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAACGGCTGCATTTCAACAAGGAAAGATAcctcctactccattctctgctcctcctcctGCAGGGGCGATGATACCACCTCCCCCCAGCCTTCCGGGTCCTCCTCGCCCTGGTATGATGCCCGCACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCCTCCTCCTCCTGGGATGATGCCAGTGGGACCTGCTCCTGGAATGAGGCCACCCATGGGAGGCCATATGCCAATGATGCCTGGGCCCCCAATGATGAGACCTCCTGCCCGTCCCATGATGGTGCCCACTCGGCCCGGAATGACTCGACCAGACAGATAAGGATAGAGGGGAGGCCTTATTGTATCGGTTTTATATTACCTGTTCTGCTTCACCAGGAGATCATGCTGCTGTGATACTGAGTTTTCTAAACAGCATAAGGAAGACTTGCTCCCCTGTCCTATGAAAGAGAATAGTTTTGGAGGGGAGAAGTGGGACAAAAAAGATGCAGTTTTCCTTTGTATTGGGAAATGTGAAAATAAAATTGTCAACTCTTTCAGTTAAAA

Publications

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