Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102135222P6
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chrX:108706462-108707064  UCSC
Strand -
Parental Sequence XM_015453308.1
Parental seq. overlap 500 bp
Parental seq. overlap (%) 78.2%
Genomic Region Intergenic
Retrocopy Summary LOC102135222P6, located on chrX:108706462-108707064, is a retrocopy of the parental gene LOC102135222. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102135222
Full Name N/A
Also known as LOC102135222
Coordinate chr7:83720626-83721399
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL18AP15
Chimpanzee Pan troglodytes RPL18AP15
Bonobo Pan paniscus RPL18AP14
Gorilla Gorilla gorilla RPL18AP11
Orangutan Pongo abelii RPL18AP13
Gibbon Nomascus leucogenys RPL18AP12
Green monkey Chlorocebus sabaeus RPL18AP15
Rhesus Macaca mulatta LOC717246P5
Baboon Papio anubis RPL18AP14
Golden snub-nosed monkey Rhinopithecus roxellana RPL18AP8
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102135222P6
CGGAGAGGCCTCCCTGAAGGCATAGGGCACACTAGGAGAGTATAAGGTAGTGGGTCCTACCCGCCCACCCCCAAATGCCACACACCGCCCCTCTACCTCATGCGAATCTTTGCACCTAATCATGTCGTCTCAAAGTCCAGCTTCTGGTACTTCGTATCTCAATTAAACAAGATAAAGAAGTTTTCAGGGGAGATTGCCTACTCTGGGCGGGTGTTTGAGAAGTCCCCTCTGCGGGTGAAGTACTTCCGCATCTGGCTGCGCTGTGACTCCCTGAGCCGCACCCACAACCTTTATCGGGAATACCAGCACCTGACCACCGCGGGCGCTGTCACCCAGTGCTACCGAGTCTTGAGCGCCCGGCACTGCGACCAGGCCCACTCCATCCAGATCATGAAGGTGGAGGAAGATCGCAGCCGGCAAGTGCAGCCGCCGTCCTTTAAGCAGTTCCACGACTCCAAGGTCAAGTTCCCGCTGCCCCACCGGGTCCTGCGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAGATGCAGGGCCCTCGCCCAGATGTGCc
>XM_015453308.1
CACTTCCTTTTGCTGGTGGCTGCGAGAGCGGAGAGGACGCCATGAAGGCTTCTGGCACACTACGAGAGTACAAGGCGGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACACCACCCCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTCGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTTTACTGCGGGCAGGTGTTTGAGAAGTCGCCACTGCGGGTGAAGAACTTCAGAATCTGGCTGCGCTATGACCCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACTGCGGGCGCTGTCACCCAGTGCTACCGAGACATGGGCGCCCGGCACCGCGCCCGGGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATTGCAGCTAGCAAGTGCCGTCGGCCGGTTGTCAAGCAGTTCCACAACTCCAAGATCAAGTTCCCGCTGCCCCAACGGGTCCTGCGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTTTAGGTGCAGGGCCTTCGCCTGGGTGTGCCCCAAATAAACTCAGGAATGCCAAAAAAAAAAAAAAA

Publications

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