Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102138187P4
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr7:4953511-4955023  UCSC
Strand +
Parental Sequence XM_005582948.2
Parental seq. overlap 1259 bp
Parental seq. overlap (%) 47.2%
Genomic Region Intergenic
Retrocopy Summary LOC102138187P4, located on chr7:4953511-4955023, is a retrocopy of the parental gene LOC102138187. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102138187
Full Name N/A
Also known as -
Coordinate chr16:15709483-15777182
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TVP23BP1
Chimpanzee Pan troglodytes TVP23BP6
Bonobo Pan paniscus CDRT4P6
Gorilla Gorilla gorilla TVP23BP2
Orangutan Pongo abelii TVP23BP3
Green monkey Chlorocebus sabaeus TVP23BP6
Rhesus Macaca mulatta TVP23BP4
Baboon Papio anubis TVP23BP3
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102138187P4
GGGGCTGGCACAGGGCTGCCAGGTTGCATCAGGACAGTAATGATGACACTGAAGACATTTCAGTGTTGGATGCGGAAGAGACAACTAACAAAACAAAACAATCCAAAATCAGATATCCAGCAGCCTCACTTTTCCAGTTATTCTTTCGAGTCAGTGCAGTTGTGGTCTCTCTTCTTTGCAAATTGGTCAGCAGCAGTTTTACTGCTTGTATGGTGACAATTATCTTGTGTGACTTTAGGGCAGTGATGAATGTCACAGGTGGACTAGTGGTGGGTCTACGGTGTTGGAATCACGTGATGAAGATGGAAAGAGCCACTGGGTGCTTGAGTCCAGAAAGGCATCCTCTCGGGAGGACGAACCTGTTTCAGAGGCTGAATCGAACCTTTTGGTTGGGACTTAATGCCTGTCCAGTGCTGTGGGTGATATATTTCTCTTGTGGCCTCTTCTCCTTCAGCTAGCCATGGTTATCATGGGTGTGGTGCTACAAGGTGCCAACCTATATGGCCACATCAGGTGTAAAGTAGGCAACAGAAAGAATGTAACAGCATGGGTCCCTCATACTTGGAAAGCAGTTTTTAAGACAAAATGCTGAAGATGATCTGACTTTGTGAACGGAGAGAGAATGCGTATGTGCTTTGTTACACTGGGGAACAACCAAAGAGATTGTTGACTCTGAACATTTTAGACCTCAGTCCAAGATGCAACAAGGAGTGTTGGCTTTGTTTTTCACTTAAAAACTTTAGTTAAAGCAAAGCAAAGTAGTTTCCTTATTAAGGTTTTATACCCTTTCCAGTAGTTGTGGCTAGAATGCATGTTGTCACTGGAGACACTGTCAACAATTGTTTTATGGTGTACATAAAATATACACATAGTCATGTAATATCAATATATTCCAAACTAATGAAAGTGTGTTTATTTACATATGTAATGGAGAACTTTGTATTTTGGTCCATAGAACATAGAAGGATGTTCTTAGTCTATCTCAAGCTCTATGTGTTTACATATTATTTCTGTAGATTATTTTCAGAAGTTAGTTTTGCTTCCACAGTAAGAGTGAGCAGCTTGGCTCATGTATACCTCAGAAATTATTGCTAATTTTTAATATATACTTCATGTTGAAATTTCTTAGACATACACAAGAAAGTAAATACCACATTTGGCCCAGTGATGTTAACTAGTTTCTAAAATGTTATTCATTTTTATTTGTAACAAGCCATTTACTTAAGTTTATGTAAAGGGATACTTTATGCTTAAGGGATAGCAGAGGTTGTTGCTGTTCTATTTATTGTATAGAAAACATGGCCAGATTTTACTTTCCAACTTACTGGAAGCTCTTCCGTGGACCTTGAGCTAATACAATATATCTTTTGTCACCAAAAGAGTATTATTCTTATGTCATAATGAGAACAATAATTTATGTGCTTGGCATAATAAATGCCTAAAAGACATTTTATTTTATGACTGTATTCTTTGTCTTGCTATAATGGGGATATTGTAAATCATTTATTTGTAT
>XM_005582948.2
CAAACATTTCCTCAAAACAGACCATGAAGCTTTCCAGTTGAGAGCCCACTGTGGTCCCAATGCTTTTCCCAGCCGGTTTTcgctcctgctccaggctccgcctccgccgtgtccgcgcttctcgccccgccccacacagcagctccgcccccgctcgctccgcccccgGAGTTACTCCTCCGGCGTTGCTCCCTCAAAGCGGAAGTGAAGCCGGACTGAGGCTCCTACAGTGGTCCCTCCTGGCCTTTGGTGACGAGTCGCGTCAGTTCCGACCCGGACCCGTACGCTGCTGCGCTGACGTGGCTCCCGGAAGTAGGGCTGGCGTAGGGCCGCCATGTTGCAGCAGGATAGTAATGATGACACTGAAGATGTTTCCCTGTTTGATGCAGAAGAGGAGACGACTAATAGACCAAGAAAATCCAAAATCAGACATCCAGTAGCATCATTTTTCCACTTATTCTTTCGAGTCAGTGCAATCGTCGTCTATCTTCTCTGTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTGACAATTATCTTGTTGTTGTCGTGTGACTTTTGGGCAGTGAAGAATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCACTGGGTATTTGAATCTAGAAAGGAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTCCAGTGCTGTGGGTGATATTTGCCTTTAGTGCACTCTTCTCCTTCAGAGTAAAATGGTTGGCGGTGGTTATCATGGGTGTGGTGCTACAAGGTGCCAACCTGTATGGTTACATCAGGTGTAAGGTGGGCAGCAGAAAGAATTTAACCAGCATGGCTACTTCATATTTTGGAAAGCAGTTCTTACGACAAAACACTGGAGATGATCAGACTTCCTGAATAGAGAAAACTTAATGTGCTTTGTTACATTGGGGAACAACTGAAGAGATTCTTGACTCTGAACCTTTTAGAGCTTAGTCCATGTTGCAACGAGGAGTGTTGGCTTTGTTTTTCCACTTAAAAACTTTATTTATAAAAAGGAAAAGTAGTTTTCATGTTAAGTTTTTATTTCCTTTCCAGCATTTGGGGCTAGAAAGTATATGTTGGCACTAGAAACATTGTCAAGATTTATTCTGTGGTGTAGGTATGCACATGTTCCATAGGTATGCACACAGCCATGTAGTATCAGTATATCCCAAGTTAATGAAAGTGTTCATTTACATAGGTAATGGAGACCTTTGCATTTTGATCCATAAAACATGGGAGGATGTTCTTAGTCTGTCTCAAAGCTCTATGTGTTTACATATTATTTCTGTAGATGATTTTCAGGAGTAAATTTTGCTTCCATGGTAAGAGTGAGCACTTTGGCTTATGTATAAGTTAGAAATTATTGTTAGTTTTTAATATGTACTTCATGGGGAAATTTCTTAGACATATACAAGCAAGTGAAAACAATTAGGGCCAGTGGTATTAACTACTTTCTAAAATCTTATTTTTATTTGTAAGAAGTCATTTACTTAAGGCCCAATTAATATAAGTGGAATCATCATCGTTTGTTTAAGGAATACCCAGAGATTGCTGCTGTTCTATTTATTTTACAGAAAGGATAGCTAGATTGAAGAAAGCTCTTCAGTGGACCTTGAGCTAATAGATCTTTTACCACTAAAAGAGCATTATTCTCATGTCATAATGAGAATAATCATTTACATACTTGGCATAATAAATGCCTAAAAGACATTTTATTTTCTGAATCTATTTTTTTTCTTGCTATAATGGGGATATTGTAAATTATGCATTTGTATTAATGGTATTTCTTAAAGCATTCTGTGTAACTGTAAACCAATCTACAAACTATTGTAGGCATTTGTAAATTCTGTTGTAGGTATTATAAACTTTGTTGAAGTCTTAATCAGCAGATTATGTTGTGAATATATTTGTACATTGTTAAAATAGTTTTTAAGATTATTTGTTTAATTGAATAAGTGTCTTATTGGAGTGATAGCTTTGAAGGTGCAAAActttatatttgtataaaattctactgtttacaaggcatttgacatgtgtaatctcatttaatcctcatgacaaatatgtaaTACTTTAGATGATGTAACAGAACTTCCGGTTATTGAGTGACTTTCCTAAGGAAAACAGATTACAGGAATATCTGTAGGATATAAAACACGATATATTAGTATTTTTAGAGAAAATATTTGCTCTAAATGCCTTTTCCTTTCTTAAAAATTAATAATTTGTTAAGAGCTTGTTTATTTTACTTATACTCAGCTGTTCTGTCTGGTGAGAAGAATTGATACTGCACTGAAGACATTTTAAAATTTAATCTGAAAGATCTAACCTAAATCTTTAGGGTTGAGAGTCTAACAGAGGATACATTGATATAGTTCTTTTAGATAACTGTGTTATTTGAACTGTAATCCTAAACCAAGTAACAACTGAATTTTAGAATATGCAtgtggcaggagctaccatgtattccctaatattcatttttccccttttatagatttaccacctaattagctagggcatggcatcctggaataaagataacctttcccaaa

Publications

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