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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102141433P3
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr4:24786888-24787324  UCSC
Strand +
Parental Sequence XM_005572399.2
Parental seq. overlap 381 bp
Parental seq. overlap (%) 53.7%
Genomic Region Intergenic
Retrocopy Summary LOC102141433P3, located on chr4:24786888-24787324, is a retrocopy of the parental gene LOC102141433. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102141433
Full Name N/A
Also known as -
Coordinate chr11:124342500-124345184
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens COX6A1P3
Chimpanzee Pan troglodytes COX6A1P3
Bonobo Pan paniscus LOC103783978P3
Gorilla Gorilla gorilla LOC101131776P2
Orangutan Pongo abelii LOC103892145P2
Gibbon Nomascus leucogenys LOC100582575P1
Green monkey Chlorocebus sabaeus LOC103239250P2
Rhesus Macaca mulatta LOC696956P3
Baboon Papio anubis LOC103876119P4
Golden snub-nosed monkey Rhinopithecus roxellana LOC104666251P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102141433P3
TCCATGGCCAGGAGGGCTCAGCTCACATGTGGAAGGCCCTCACCTGCTTCATTGTGCTCCCCAAGGTGGCAATAAGCTTGCTGAATGTGTTCCTGAAGTCGCACCACCATGGAGAGCACAAGACCCGAGGTCATCACCTACCCCCATCTCCACATCGTGTCCAAGCCCTTTCCCTGGGGAGACGGTAACCATACTCTATTCCATAACCCTGTGTGAATCCACTTCCAACTGGCTATGAAGATAAAGAGAATCTGGACCACTACTCGGGCACCGGGACCACAGCACCAGTTTGGACCATTACTCTGCTCACAGACCAGAAAAGTATACAGGACCTTAATCTCACCTTCTTTACTTGTAACAAATGATGACTAGCATATTGATCTTCCATCCCTTTGCTTGTGGCAGGATGTGGCTTAAATAAAAAACTTCAACTTAGA
>XM_005572399.2
CTCTTGCTCGAGACGCCGAGGATTTTGACGAGGACTCTCTCGGCGCGGATGATAGTGCTCAGGTTAATGCCAGCGGGAGGGCGGTGCCCAATAGTAACTTCCTTTGGAGGTTGTAGTCCTGCCCCCAGAGCCAATTTTCGACTTCCGTTTCCGGCGCTGCGGTAGTCCAGGTCGAAAATGGCGGCAGTTGGTGTGTCACGGGTTTCTCGGCTGCTGGGTCGGTCCGGGCCACAGCTGGGGCGGCCTGTGTCGAGTGGCGCCCATGGCGAAGAGGGCTCAGCTCGCATGTGGAAGACCCTCACCTTTTTCGTCGCGCTCCCCGGGGTGGCAGTCAGCATGCTGAATGTGTACCTGAAGTCGCACCACGGAGAGCACGAGAGATCCGAGTTCATCGCCTACCCCCATCTCCGCATCAGGACCAAGCCGTTTCCCTGGGGAGATGGTAACCATACTCTATTCCATAACCCTCATGTGAATCCACTTCCAACTGGCTACGAAGATGAATAAAGAGAATCTGGACCACTACCTGGGCACCAGGGACCACAGCACTGGTTTGGACCATTACTCTGCATATGGACCAGAAAAAGTATACGGGACCTTAAGCTCATCTTCTTGTATCAAATGATGACTGGTATACTGGTCTTCCATCCCTTTGCTTGTGGCAGGAGATGGCTTAAATAAATAACTTAAACTTAGATTAGT

Publications

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