Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ASH2LP1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr5:66160372-66160625  UCSC
Strand +
Parental Sequence XM_031013793.1
Parental seq. overlap 209 bp
Parental seq. overlap (%) 8.1%
Genomic Region Intergenic
Retrocopy Summary ASH2LP1, located on chr5:66160372-66160625, is a retrocopy of the parental gene ASH2L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ASH2L
Full Name N/A
Also known as ASH2L
Coordinate chr8:74094281-74127524
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ASH2LP4
Chimpanzee Pan troglodytes ASH2LP1
Bonobo Pan paniscus ASH2LP1
Horse Equus caballus ASH2LP1
Cat Felis catus ASH2LP1
Pale spear-nosed bat Phyllostomus discolor ASH2LP1
Velvety free-tailed bat Molossus molossus ASH2LP1
Greater horseshoe bat Rhinolophus ferrumequinum ASH2LP2
Egyptian rousette Rousettus aegyptiacus ASH2LP1
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ASH2LP1
CAAGCAAAGAAGAGCCTAAAGCAGCCTCCTCAACATGAGATAATATTTTATAAAAATGTTGTCAATACAGATGTGGTTTACAAATATATTTTTGAGGGGTTTACTTTCTAGCTATCTCACCATGCAAGAGTAGCATGGTTTCCTTAACTTTGGAACTTGCTTTATGTATCCACCAATAGATATCACCTACTGGCCTATGAGTGGCATGAGCTAGGGCCTGTGGTAGAACATACTCTGGCTAATGTCTTATATCA
>XM_031013793.1
CACGCACGCGAGAGAAGAGAGTATTCTCGCGAGAAGTCCAGGGGTGGCCGTGATGGCGGCGGCAGGAGCAGGACCTGGCCAGGAAGCGGGTGCCGGGCCTGGCCCAGGAGCGGCCGCAAATGCAACAGGGGCAGAAGAGGGGGAGATGAAGCCGGTGGCAGCGGGAGCAGCCGCTCCTCCTGGAGAGGGGACCTCTGCTGCTCCGACAGTTGAGCCCAGTTCCGGGGAGGCTGAAGGCGGGGAGGCAAACTTGGTCGATGTAAGCGGTGGCTTGGAGACAGAATCATCTAATGGAAAAGATACACTAGAAGGTGCTGGGGATACGTCAGAGGTGATGGATACTCAGGCGGGCTCCGTGGATGAAGAGAATGGCCGACAGTTGGGTGAGGTCGAGCTGCAATGTGGGATTTGTACAAAATGGTTCACAGCTGACACATTTGGCATAGATACCTCATCCTGTCTACCTTTCATGACCAACTACAGTTTTCATTGCAATGTCTGCCATCACAGTGGGAATACCTATTTCCTCCGGAAGCAAGCAAACTTGAAGGAAATGTGCCTTAGTGCTTTGGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATCCGAAGACAATGTTCTCCAAAGATAAGGATATTATACCATTTATTGATAAATACTGGGAGTGTATGACAACCAGACAGAGACCTGGGAAAATGACTTGGCCAAATAACATTGTTAAAACAATGAGTAAAGAAAGAGATGTATTCTTGGTAAAGGAACACCCAGATCCAGGGAGTAAAGACCCAGAAGAAGATTACCCCAAATTTGGACTTTTGGATCAGGACCTTAGTAACATTGGTCCTGCTTATGACAACCAAAAACAGAGCAGTGCTGTGTCTACTAGTGGGAATTTAAATGGGGGAATTGCAGCAGGAAGCAGCGGAAAAGGACGAGGAGCCAAGCGCAAACAGCAGGATGGAGGGACCACAGGGACCACCAAGAAGGCCCGGAGTGACCCTTTGTTTTCTGCTCAGCGCCTTCCCCCTCATGGCTACCCATTGGAACACCCGTTTAACAAAGATGGCTATCGGTATATTCTAGCTGAGCCTGATCCCCACGCCCCTGACCCCGAGAAGCTGGAACTTGACTGCTGGGCAGGAAAACCTATTCCTGGAGACCTCTACAGAGCCTGCTTGTATGAACGGGTTTTGTTAGCCCTACATGATCGAGCTCCCCAGTTAAAGATCTCAGATGACCGGCTGACTGTGGTTGGAGAGAAGGGCTACTCTATGGTGAGGGCCTCTCATGGAGTACGGAAAGGTGCCTGGTATTTTGAAATCACTGTGGATGAGATGCCACCAGATACCGCTGCCAGACTGGGTTGGTCCCAGCCCCTAGGAAACCTTCAAGCTCCTTTAGGTTATGATAAATTTAGCTATTCTTGGCGGAGCAAAAAGGGAACCAAGTTCCACCAGTCCATTGGCAAACACTACTCTTCTGGCTATGGACAGGGAGACGTCCTGGGATTTTATATTAATCTTCCTGAagacacagagacagccaagtcattgccagacacatacaaagaTAAGGCTTTGATAAAATTCAAGAGTTATTTGTATTTTGAGGAAAAAGACTTTGTGGATAAAGCAGAGAAGAGCCTGAAGCAGACTCCCCATAGTGAGATAATATTTTATAAAAATGGTGTCAATCAAGGTGTGGCTTACAAAGATATTTTTGAGGGGGTTTACTTCCCAGCCATCTCACTGTACAAGAGCTGCACGGTTTCCATTAACTTTGGACCATGCTTCAAGTATCCTCCGAAGGATCTCACTTACCGCCCTATGAGTGACATGGGCTGGGGCGCCGTGGTAGAGCACACCCTGGCTGACGTCTTGTATCACGTGGAGACAGAAGTGGATGGGAGGCGCAGTCCCCCATGGGAACCCTGACCAGGTCCCTCTTTGCTGTCAAGGACTTTCTGGGAATAATACTGGGGGTTTTGTTTTTGTTTTTGAACTGTCTCAAATGTTCTCCCAAAGATGCTAAAAACACAGCCTCTCCTTTTAGCAAGTTAAAAGGCTGGGTAGGACTGCGGGAGACTGCCTGCCTTTCACCATTTTCTCCCCACTTCCAGTGACTGCTCTTATTTTGTGTACCATAAGCCAACAACCGCTGACTCCAGGATTGCATAAGCCCCCTGTGAAATCGGTGCTGTACTGCATACCCTGCCAGCTGTGACTTGTTATCCTACTATATTTTCTAAGGAGTGAATAATATTGTCCGAGTAACTAACTTATTTAAAAGACATTTCCTTCTGTGGGCATTGACTGCATCCCACCTGTTTTCCAAGGAAATGGTAACCTGTTTCTGAGAACACCTGTAATCAATGGCTATACATTCCAAACCAATCTAAACGCTATTTCCTTTTGGTGTGGGTTTGGTTTTGTTGTTCATTTTGAAATACACTTTTGAACACTGAGATCCATAAAACTACTAGATCTCTGGAAGTGTAATTGTGAAAGAAACTTGCTTGCAGCTTTAAGAAAATGAGAAACTTCCCAAATAAAACTTGTTTTGAAGTTTG

Publications

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