Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102143207P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr3:138274500-138275183  UCSC
Strand +
Parental Sequence XM_005586079.2
Parental seq. overlap 582 bp
Parental seq. overlap (%) 80.9%
Genomic Region Intragenic (ATXN7L1)
Retrocopy Summary LOC102143207P1, located on chr3:138274500-138275183, is a retrocopy of the parental gene LOC102143207. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102143207
Full Name N/A
Also known as NULL
Coordinate chr17:62941981-62942994
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL13AP35
Chimpanzee Pan troglodytes RPL13AP11
Bonobo Pan paniscus RPL13AP14
Gorilla Gorilla gorilla RPL13AP12
Orangutan Pongo abelii RPL13AP14
Green monkey Chlorocebus sabaeus RPL13AP19
Rhesus Macaca mulatta LOC698713P2
Baboon Papio anubis RPL13AP7
Golden snub-nosed monkey Rhinopithecus roxellana RPL13AP9
Marmoset Callithrix jacchus RPL13AP14
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102143207P1
CCTTTCCCAGGGGGCTGCTGAAGATGACAGAGGGGCAGGTCCTGGTGCTCGATGGTCGAGGCCATGTCCTGGGCCGCCTGGAGGCCATTGTGGCTAAGTAGGTACTGCTGGGGCGGAAGGTAGAGGTCGTGCGCTATGAGGGCATCAACATTTCTGGCTATTTCTACAGCAACAAGTTGAAGTACCTGGCCTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGTCTCTCTACCACTTCCCGAGGCCCCTACCACTTCCGGGCCTCTATCCGCACCTTCCGGCGGACCTCGAGGCATGCTGTCCCTCGAGACTAAGCGAGGCCGGGCCGCCCTGGATCCCCTCAAGCTGTTTGAGGCATCCCACCGCCCTATGACAACAAAAAGCGGATGGTGGTTCCTGCTGCCCTCGAAGTCATGCATCTGAAGCCTACAAGAAAGTTTGCCTACATGGGGCACCTGGCTCACGAGGTTGGCTGTAAGTACCAGGCAGTGGCAGCCACCCTGAAGGAGAAGAGGAAGGAGAAAGCCAAGATACACTATCGGAAGAAGAAACAGCTCATGAGGCTATGGAAACAGGGTGAAAAGAACGTGGAGAAGAAAACTGACAAATACACAGAGGCCCGCAAAATCCATGAACTCCTGGTCTGAGCCCAGTAAAGACTGTTTATTCCTAAAAAAA
>XM_005586079.2
tgtttttaaaaacccacttcaGCTTTCCCAGGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCTGGTGCTCGATGGTCCAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGTACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGCGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTCTGGCGGACCGTGCGAGGCATGCTGCCTCACAAGACCAAGCGAGGCGCCCTGGACCGCCTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAAAGTTTGCCTATCTGGGGCGCCTGGCTCACGACGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCTTGGAGGAGAAGAGGAAAGAGAAAGCCAAGATCCACTACAGGAAGCAGCAGCAGCTCGTGAGGCTACAGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACACAGGTCCTCAAGACCCACAGACTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCTCAAAAAATAAAATAAAat

Publications

PMID - Link Title