Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name BNIP3P4
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Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr15:17373746-17374876  UCSC
Strand +
Parental Sequence XM_019034878.2
Parental seq. overlap 954 bp
Parental seq. overlap (%) 58%
Genomic Region Intragenic (LOC101139167)
Retrocopy Summary BNIP3P4, located on chr15:17373746-17374876, is a retrocopy of the parental gene BNIP3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name BNIP3
Full Name N/A
Also known as BNIP3
Coordinate chr10:127316944-127331233
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens BNIP3P5
Chimpanzee Pan troglodytes BNIP3P3
Bonobo Pan paniscus BNIP3P4
Gibbon Nomascus leucogenys BNIP3P4
Green monkey Chlorocebus sabaeus BNIP3P8
Crab-eating macaque Macaca fascicularis BNIP3P2
Rhesus Macaca mulatta BNIP3P2
Baboon Papio anubis BNIP3P3
Orangutan Pongo abelii Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>BNIP3P4
GGAGAAAAATAGCTCTCAGTCTGAGGAAGATACTGAGAAAAGGAAAGAAGTTGAAAGCATCTTGAAGAAAAACTCAGATTGGATATGGGATTGGACAAGTTGGCCAGAAAATATTCCCCACAAGGAGTTCCTCTTTAAAGCACCTGAAGCACGTAGCTACCCAGCATGGAATTTAAAGCCTGATGAGGAAAGGGGGCATTTTCTCAGCAGAATTTCCAAAGGGTTTTGCTGCCGTCTCATCTGGTGGCCATGGGATTGGGGATCTATATTGGAAGGCATCTGACAACTTCTACCAGCACCTTTTGATGAATAATTTGAATCCAGCTTTGTGCGTATAGTGGGGATTTCTATCTGAGCTTGTGACACAGCTAACTCAGGAGCTGTTATGGTCCTTGGGTGGCTGTTTCACTTGTTTTTATTTGTTCTGTAAATAGTGCTTTCCTAATTTAGTAAAATGAAAGAATAGACACTAAAATCACACTGACCTATACTTATACCTATAGAATCAGTTAATAAGGGTGTCAGACTGATTAATATCTACTGTAACAATTTGGCAGTGAGTTTTCTTTGGATATTAGTATAAATATGTAAGTATCGTTTTAATATATTAGTCATGATATAGTATTTTAAAAATTATCTGTAACCTGAATTCTGTTAAAACACTTTATATTCCAAAAGAATGAATGACAGTGATATTAAAATCACTACATTAAAGGGTTTGCCCAGAATAAATATTGTGGCCTTACTTACACTACTGTGGAAAATATTATGTTTAATTTAAATAAATGCAGGTTGTCTACTAAGACTACACTTAACTATGCTAATTGTTCTTAATAAATAGAAAACAAGTTACAGCTACAAATGCCACCATACACTTCATACACCAGATTGTTCTCACTTTTGCAGCATAAGGACTTCAACCTCCAACTATTAGGTAATCAACTTGGATAATGTGTCTGTCAAAGGCACGTGCTCAGTATCTTTTCCTCTTTATCACTCTGGATTGCTGAATTTAATCCTATCCTTTGTGCTCAACTTTTTTGTGCTGTTAAAATCAGCTTTATCCTAAGCATATCTGTATCTACTTTAAAAGATTGGAAATGGAAAAAAATAAATATTTGCCATATCCTT
>XM_019034878.2
CGGCCAATGGGCGACGCGGCCGCAGATCCGCCCGGCCCCGCCCTGCCCTGTGAGTTCCTCCGGCCGGGCTGCGGGGCTCCGCTCAGTCCGGGAGCGCAGCTGGGCCGCGGCGCTCCTACCTCCGCTTTCCCACCGCCTGCAGCTGAAGCACATCCCGCAGCCCGGCGCGGACTCCGATCGCCGCAGTTGCCCTCCGGAGCCATGTCGCAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGGGCTCCTGGGTAGAATTGCACTTCAGCAATAATGGGAACGGGAGCAGCGTTCCAGCCTCGGTTTCTATTTATAATGGTGACATGGAAAAAATACTGCTGGACGCACAGCATGAGTCTGGACGGAGTAGCTCCAAGAGTTCTCACTGTGACAGCCCACCTCGCTCACAGACACCACAAGATACCAACAGAGCTTCTGAAACAGATACCCATAGCATTGGAGAGAAAAACAGCTCACAGTCTGAGGAAGATGATATTGAGAGAAGGAAAGAAGTTGAAAGCATCTTGAAGAAAAACTCAGATTGGATATGGGATTGGTCAAGTCGGCCGGAAAATATTCCCCCCAAGGAGTTCCTCTTTAAACACCCGAAGCGCACGGCCACCCTCAGCATGAGGAACACGAGCGTCATGAAGAAAGGGGGCATATTCTCTGCAGAATTTCTGAAAGTTTTCCTTCCATCTCTGCTGCTCTCTCATTTGCTGGCCATCGGATTGGGGATCTATATTGGAAGGCGTCTGACAACCTCCACCAGCACCTTTTGATGAAGAACTGGAGTCTGACTTGGTTCGTTAGTGGATTACTTCTGAGCTTGCAACATAGCTCACTGAAGAGCTGTTAGATCCTGGGGTGGCCACGTCACTTGTGTTTATTTGTTCTGTAAATGCTGCGTTCCTAATTTAGTAAAATAAAAGAATAGACACTAAAATGATGTTGATCTATAATTATACCTATGGGATCAATAAGCATGTCAGACTGATTAATGTCTACTGTAAAAAATTTGGTAGTAAATTTTCATTTGATATTAGATATAAATATCTGAATATAAATAATTTTAATATACTAGTCATGATGTGTGTTGTATTTTAAAAATTATCTGCAACCTTAATTCAGTTGAAGTACTTTATATTTCAAAAGAATGAATAACATTGATAATAAAATCGCTACTTTAAGGGGTTTGTCCAAAATAAATATTATGGCCTTATATATCACACTATTGTAGAAAGTATTATTTAATTTAAATGGATGCAGGTTGTCTACTAAAGAAAGATTATACATAACTATGCTAATTGTTCATAATCAACAGAAACCAAGATAGAGCTACAAACTCAGCTGTACAGTTCGTACACTAAACTCTTCTTGCTTTTGCGTTATAAGGAATTAAGTCTCCGATTATTAGGTGATCACCCTGGATGATCAGTTTTCTGCTGAAGGCACCTGCTCAGTATCTTTTCCTGTTTATCACTCTGCATTGGTGAATTTAATCCTCTCCTTTGTGTTCAACTTTTGTGTGCTTTTAAAATCAGCTTTATTCTAAGCAAATCTGTGTCTACTTTAAAAAACTGGAAATGGAAAAAAAAATAAATCTTTGCCAAATCCTTCAGA

Publications

PMID - Link Title
No publications available for this retrocopy