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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102143207P5
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Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr14:53301356-53302320  UCSC
Strand -
Parental Sequence XM_005586079.2
Parental seq. overlap 596 bp
Parental seq. overlap (%) 83.9%
Genomic Region Intergenic
Retrocopy Summary LOC102143207P5, located on chr14:53301356-53302320, is a retrocopy of the parental gene LOC102143207. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102143207
Full Name N/A
Also known as NULL
Coordinate chr17:62941981-62942994
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL13AP38
Chimpanzee Pan troglodytes RPL13AP18
Bonobo Pan paniscus RPL13AP20
Gorilla Gorilla gorilla RPL13AP16
Orangutan Pongo abelii RPL13AP20
Green monkey Chlorocebus sabaeus RPL13AP1
Rhesus Macaca mulatta LOC698713P6
Golden snub-nosed monkey Rhinopithecus roxellana RPL13AP22
Gibbon Nomascus leucogenys Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102143207P5
TTTCCTAGGCGGCCGCTGAAGATGGCAGAGGTGCAGGTCCTGGTGCTCAATGGTCTAGGCCATCTCCTGGGCCTCCTGGCAGCCATCGTGGCTAAGCAGGTACTGCTGGGCCAGAAGGTGGTGGTCATACGCTGCAAGGGCATCAACATTTCTGGCAAtATTTCTGGCAATTTCCACAGAAACTAGTTGAAGTACCTGGTTTTCCTCCACAAGCAGATGAACACCAACTCTTCCGAGGCTCCTACCACTTCCGGGCCCTCTGCTACATGTTCCGGCGGACGCTGCGAGGCATGCTGCCCCATAAGACCAAGCGAGGCCAGGCTGCCCTGGACCGCCTCAAGGTGTTTGACATCATCCCACTACCCTAAGAAAAGAAACAGTGGATGACAGTTCTTGCTGCCCTCAAGGTCGTGCATCTGAAGCCTATGAGGAAGTCTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCTACCCTGGAGGAGAAGAGGAAGGAGAAAGCCAAGATCCACTACTGGAAGAAGAAACAGCTCATGAGGCTACGGAAACTGGCAGAGAAGAACATGGAGAAGAAAATTGACAAATACACAGAAGTCCTCAAGACCCACGGCCTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCACAAAAAAAAAAAa
>XM_005586079.2
tgtttttaaaaacccacttcaGCTTTCCCAGGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCTGGTGCTCGATGGTCCAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGTACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGCGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTCTGGCGGACCGTGCGAGGCATGCTGCCTCACAAGACCAAGCGAGGCGCCCTGGACCGCCTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAAAGTTTGCCTATCTGGGGCGCCTGGCTCACGACGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCTTGGAGGAGAAGAGGAAAGAGAAAGCCAAGATCCACTACAGGAAGCAGCAGCAGCTCGTGAGGCTACAGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACACAGGTCCTCAAGACCCACAGACTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCTCAAAAAATAAAATAAAat

Publications

PMID - Link Title
No publications available for this retrocopy