Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CCDC86P1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr7:28130544-28132323  UCSC
Strand -
Parental Sequence XM_004051290.3
Parental seq. overlap 1567 bp
Parental seq. overlap (%) 77.7%
Genomic Region Intergenic
Retrocopy Summary CCDC86P1, located on chr7:28130544-28132323, is a retrocopy of the parental gene CCDC86. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CCDC86
Full Name N/A
Also known as CCDC86
Coordinate chr11:44760991-44770088
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CCDC86P2
Chimpanzee Pan troglodytes CCDC86P2
Bonobo Pan paniscus CCDC86P2
Orangutan Pongo abelii CCDC86P2
Gibbon Nomascus leucogenys CCDC86P2
Green monkey Chlorocebus sabaeus CCDC86P1
Crab-eating macaque Macaca fascicularis CCDC86P1
Rhesus Macaca mulatta CCDC86P1
Baboon Papio anubis CCDC86P1
Golden snub-nosed monkey Rhinopithecus roxellana CCDC86P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CCDC86P1
AGGGGTTTGGAAACTTACCGACTAAACGATGGATACACCGCCAAGGCGAAGCTGACAGCTGGAAGGCCTAGGGCCTGAATCCCCCCAGAGCCTTACCTCAGTTTCGCGTAGGAGATGGGTCCTTGTGGAGTTCGAGTTGGACCCAGAAGAAACGAGGGAGCCTGGGTCTCCTCCGAGTGTGCAACAAGCTGGCCTGGGGCCCCCTGAAAGGACGCTGGAGAGAAGCCCAGGATCACCCAGTCTTTGCAGCAGGGTGCAGGCTTGGAGTCCCCCCCAAGGGCGGCCAGAATCAGGTCCAGGGTCCCCCCAGTGTCAGCAAGGCCTACACCTGGAGTCGCCTCAAAGACAGCTGGAGTCCAGTCCTCAATCCCCACGATGTCAGCCGAAGCCAAGTGAGGAGAAACCCAAGTGTTCTCAGGGCCAGGGAGTACCTGGCCTCGGAGTTGGCCCAAAGTAAGGAGGAGCTGATCCCAGGGGCCCCCCCAGCACCAGCTACTGCCCAGGCCCAGGATCACCAGAGCCTTAACCCCAGTCAGGAAGCTCCGGGTCCGGAGCCCTCTCAGCCACTACTGCAGCTAACACTTGAGGCACCTGGCTTCCCCCAGGGTCAGCACGAGCAGAGCAAACCACCTCCAGCTGGGGAGATGGTGACAGACGGCTTCGGGGCAAAGAAGCCAAAGGGTTCTTCATCCCAGGCCCCAGCGTCCAAGAAGCTGAAGGAGGAGCAGCTTCCTGTAATCCCGAAGGGGAAGCCCAAATCAGGGCAAGTGTGGAAGGACCGCTCCAAGAAAAGATTCTCTCAGATGCTTCAGGACAAGCCCCTGCGTATATCGTGGCAGCGGAAGATGAAGCAGGAGAGGAAGCTGGCCAAGGACTTTGCCCGTCACCTGGAGGAGAAGTAGGAGAGGCGCCGCCAGGAGAAGAAACAGCGTCGGGCGGAGAACCTGAAATGCCGCCTGGAGAACGAGCGGAAGGTGGAGATCGTCCAAGTGATCCGAAACCCTGCCAAGCTCAAGGGGGCAAAGCAGCAGCAGCTGCGCTCCATTGAGAAGCGGGACACCCTAGCCCTGCTGCAGAAGCAGCCGCCCTAGCGGCCGGCAGCCAAGATCTGAGCTCAGGATGGCCCGAGGCCTTCCACGGCCAACAATCATGTCAGACCCAGCACCTCAGGCCGCTGCTCAGACAACTCTGCTGGAGCCGGCACTCCAACCCCATGGCTCCAGAATAGGGACCCCCAACTGGGGTTCCTTGGCCTTTGAAGACTTGCAGGCAGGTCTCTGTGGGACAGAAGTCCAGAGGTGGGGCTGGGACCTGGCAGAGATGGGGCGGGAAGAGATTCAGCCCCCATCCCTCCTTCCTCTCCTTCTTCAAGTGCCTTCAAACCAAGAATAGTATATTATTCTGGTTCCTCAGTGAGCTGGTGACTGGTGGGTGACTTCCCTAGCGATGTATGTCCTGTCTCAGCGTCCTAGGTCCATCCCAGGCCTGGAGGCTGGCAGTTGGGAATCCAACTTCCCACACACCTTCCCAAAGGCTGCTCTGGGCACCTCGGCGCCCCACTAGCTCTGTCCCCAGCAAACTGAACCCAGCTCCTCCCTACTTTTCAACACTGAAAGATTAAAATGGGAGGCTGCAGGGAGCAGGGTTTTCCCCTAGCACCCCCTTTCCAAACCAAACTCCGCAGAAGCCCCAGAGAATCTAACTCATGTCGGTCCAGTCTACAGCAAAAATATTTa
>XM_004051290.3
CCCGACCCCGGTCCCGCCTCTCCACCCCTCACCAACATGGCCGCCTCAGCAACAGTCCCCTCCTGTGTGTCACGGACGCGGCGACTCCTGACGTCATAGGAAGGCGCCGGTTTCGGCGGGGCTGCACGTGCGCAGGGGTGTGGAAACTTACCGGCTGAGCCATGGATACACCGTTAAGGCGCAGCCGACGGCTGGGAGGCCTAAGGCCCGAATCCCCCGAGAGCCTCACCTCAGTTTCGCGGACGAGACGGGCCCTTGTGGAGTTCGAGTCGAACCCAGAAGAAACGAGGGAGCCCGGGTCTCCTCCGAGTGTGCAGCGGGCTGGCCTGGGGTCCCCCGAAAGGCCGCCGAAGACAAGTCCAGGATCACCCCGTCTGCAGCAGGATGCAGGCTTGGAGTTCCCCCAGGGGCAGCCAGAGCCAGGCGCAGCGTCCCCCCAGCGTCAGCAAGACCTACACCTGGAGTCGCCTCAAAGACAGCCGGAGTACAGTCCTGAATCCCCACGATGTCAGCCGAAGCCAAGTGAGGAGGCACCAAAGTGTTCTCAGGACCAGGGAGTACTGGCCTCGGAGTTGGCCCAGAGTAAGGAGGAGCTGACCCCGGGGGCCCCCCAGCATCAGCTACCGCCGGTCCCGGGATCACCAGAGCCTTACCCCGGTCAGCAAGCTTCCGGTCCGGAGCCCTCTCAGCCACTACTGGAGCTGACACCCAGGGCACCTGGCTCCCCCCGGGGTCAGCATGAGCCGAGCAAACCACCTCCAGCTGGGGAGACGGTGACAGGCGGCTTCGGGGCAAAGAAGCGAAAAGGTTCTTCATCCCAGGCCCTAGCGTCCAAGAAGTTGAATAAAGAGGAGCTTCCTGTAATCCCAAAGGGGAAGCCCAAATCGGGGCGAGTGTGGAAGGACCGCTCCAAGAAAAGATTCTCCCAGATGCTTCAGGACAAGCCCCTGCGCACATCGTGGCAGCGGAAGATGAAGGAACGGCAGGAGAGGAAGCTGGCCAAGGACTTTGCCCGTCACCTGGAGGAGGAGAAGGAGAGGCGCCGCCAGGAGAAGAAACAGCGCCGGGCTGAGAACCTGAAACGCCGCCTGGAGAATGAGCGGAAGGCAGAGGTCGTCCAAGTGATCCGAAACCCCGCCAAGCTCAAGCGGGCAAAGAAGAAGCAGCTGCGCTCCATTGAGAAGCGGGACACCCTGGCCCTGCTGCAGAAGCAGCCGCCCCAGCAGCCGGCAGCCAAGATCTGAGCTCAGGACGGCCCGAGGCCTTCCATGGCCAACAACCATGTCAGACACAGCACCTCAGGCCGCTGCTCAGATGCCTCTGCTGGAGCCGGCACTCCAAACCCATGGCTCCAGAACAGGGACCCCCACCCCGACCGGGGCTCCTCGGCCTTTGAAGGCTTCCAGGCAGGTCTGTGTGGGACAGAAGCCCAGAGGGGGCCTGGGACCTGGCAGAGATGGGGGCGGGAAGAGATTCAGCTCCCATCCCTCCTTCCTCTCCTTCTCCAAGTGCCTTCAAACCAAGAACTGTACATTCTTCTGGTTCCTCAGTGAGCTGGTGACTGGCAGGTGACTCCCTCAGCAGTGTATGCCCTTTCTCAGCATCCTAGGTCCATCCAAGGCCTGGAGGCTGACAGTTGGGAATCCAGCTTCCCCCACACCTTCCCAAAGGCTGCTCTGAGCACCTCCACACCCTACTGCCTCTGTCCCCAGCAAACTGAATCCGGTTCCTCTCCACTTTTCAATACTGAAAGATTAAAATGGGGAGGTTGCAGGGAGCAGAGCTTTTCCCTAGCACCCCCTTTCCCAAACCAGTCTCTGCAGAAGCCCCAGAGAATCTAACTCATGCCTGTCCAGTCTACAGCAAaaatatttattgagtgcctgttgcatacaggcacaatcctaggcactggcaaatacagacaatagaccgaagtccctgccctcgaggagctttcattctgatggagagaaaacataataaacaagcaaaatgcaccacgtg

Publications

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