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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102145832P4
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr8:52682557-52683319  UCSC
Strand -
Parental Sequence XM_005580811.2
Parental seq. overlap 638 bp
Parental seq. overlap (%) 72.4%
Genomic Region Intergenic
Retrocopy Summary LOC102145832P4, located on chr8:52682557-52683319, is a retrocopy of the parental gene LOC102145832. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102145832
Full Name N/A
Also known as NULL
Coordinate chr15:11954596-11955787
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens BTF3P1
Chimpanzee Pan troglodytes BTF3P8
Bonobo Pan paniscus BTF3P8
Gorilla Gorilla gorilla BTF3P9
Orangutan Pongo abelii BTF3P8
Gibbon Nomascus leucogenys BTF3P11
Green monkey Chlorocebus sabaeus BTF3P6
Rhesus Macaca mulatta BTF3P11
Baboon Papio anubis BTF3P11
Golden snub-nosed monkey Rhinopithecus roxellana BTF3P14
Marmoset Callithrix jacchus BTF3P29
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102145832P4
ACAAGTTGAAAGAAACAATCATGAATCAGGGAAAGCTCAGCAGACAGCAGGGACCGGTGTGCATTGGTGAGAAAGCAACTGCTTGCAGAAGGAAGAAGAACAGCTGCAGCAGATTATAAAAAACTTTAGCTCTCCTTAAAGAAGTTAGGGGTAAACACTATCTCTGGTACTGAAGAGGTGAATACGTTTACAAACCGATGAACAGCAATCCATTTTAGCAACCCTAAAGGTCAGGTACCTCTGTGAACACTTTCACCTTGACAGGCCATGCTGGGACAAAGCTGCTGAAAGAAATGCTACCAGCTGGTTTTTCATTGTAAACCAGCTTGGTGCAGACAGTCTGACTTAAAGGAGACTGGCTGGAGCTCCGCCCAACTATCTGTAGATGGAAAAGCACCACTTGCTGCTGGAGAGGATGACGATGATGGTGAGAATGAAGTTCCTGACCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAGGTGAAGTGAATTGAGTCAACTTCTAAAGAAAATAGAAGTTGCAGAAGTTACTGGGAGCTGCTGTTTTATATTATGACTGCTTTTCAAAATTGTCTTCTTTATGGATCTCATAAAAACTAAATCTCTAACATTTTTAAACCCAAGTGCCTTAGATACTTCAGCTGTTTTTAGGTTTTGCTTATACACAATTCATTCTTTGCAGCTAATTAAGCTGAAAAAAACCTGGGAATAAAGTTTGAAACAAAGATTAATAGAGTTCTTTGTCTAATTAAAAAAAAAT
>XM_005580811.2
TGCGTGCGCCTAATCTCAGCCGGTCCACCCCAGACCTCCTGAGCACCAACCCTAGGCCCCCGCGCGGCCCCTTATTCGCTCTGACAAGATGAAAGAAACAATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTAGTGGGAAAGGAACTGCTCGCAGAAAGAAGAAGGTGGTTCATAGAACAGCCACAGCAGATGATAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAAACGATATCTCTGGTATTGAAGAGGTGAGTATGTTTACAAACCAAGGAACAGTGATCCACTTTAACaaCCCTAAAGTTCAGGCATCTCTGGCAGCGCACGCATTCACCATTACAGGCCACGCTGAGACGAAGCAGCTGACAGAAATGCTACCCAGCATCGTAAACCAGCTTGGTGCAGATAGTCTGACTAGATTAAGGAGACTGGCCGAAGCTCTGCCCAAACAGTCTGTAGATGGAAAATCACCACTTGCTACCGGAGAGGATGATGATGATGAAGTTCCAGATCTTGCGGATAATTTTGATGAGGCTTCCAAGAATGAGGCAAACTGAATTGAGTCAAGTTCTGAAGATAAAACTTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACTGCTTTTTAAGAAATTTTTGTTTATGGATCTGATAAAATCTAGATCTCTGATATTTTTAAGCCCAAGCCCCTTGGACACTGCAGCTCTTTTCAGTTTTTGCTTATACACAATTCATTCTTTGCAGCTAATTAAGCCGAAGAAGCCCGAGAATCAAGTTTGAAACAAAGGTTAATAAAGTTCTTTGCCTAGTaaaaaaaaaaaaaaaaaaaaaaaa

Publications

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