Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC102146764P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr4:54402206-54402408  UCSC
Strand +
Parental Sequence NM_001287696.1
Parental seq. overlap 173 bp
Parental seq. overlap (%) 10%
Genomic Region Intragenic (SASH1)
Retrocopy Summary LOC102146764P1, located on chr4:54402206-54402408, is a retrocopy of the parental gene CYP51A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CYP51A1
Full Name cytochrome P450 family 51 subfamily A member 1
Also known as CYP51|CYPLI|LDM|QtsA-20162
Coordinate chr3:119841775-119863282
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Orangutan Pongo abelii CYP51A1P1
Gibbon Nomascus leucogenys LOC100582853P1
Green monkey Chlorocebus sabaeus LOC103226567P1
Rhesus Macaca mulatta LOC703490P1
Baboon Papio anubis LOC101018881P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104654375P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC102146764P1
TCTATGTGCCATTTGGAGGTGGGCGTCATCATATTGGGAAAAATTTTGCCCATGTTCAGATCAAGACAATTTGGTCCACTCTGTTTCATTTGCATGAATTTGATTTCATTGATGGATCTTTTCCCACTGTAAATTATAAAACCATGATTCATCACGCCCCTAAAAACCCAGATATCACATACAAATGAAGATCAAAATGAAAA
>NM_001287696.1
AGTAGGAAACCTGGGGGCCGGGGCCGCCTGTGGACGACCATCTGCCAGCTTCTCTCGCTCCGTCGACTAGGAGGAGCGGTGGCGACCTCGGCCTTCAGTGTCTTCGGCAGAGTGAAATGGCGGCGGCGGCCGGGATGATGTTGCTGGGCTTGCTGCAGGCGGGTGGGTCGGTGCTGGGCCAGGCGATGGAGAAGGTGACAGGCGGCAACCTCCTGTCCATGCTGCTGATCGCCTGCGCCTTCACCCTCAGTTTAGTCTACCTGTTCCGTCTCGCCGCCGGCCACCTGGTCCAGCTGCCCGCAGGGGCGAAAAGTCCTCCATACATTTTCTCCCCGATTCCATTCCTTGGGCATGCCATAGCCTTTGGGAAAAGTCCAGTTGAATTTCTAGAAAATGCATATGAGAAGTATGGACCTGTATTTAGTTTTACCATGGTAGGCAAGACATTTACTTACCTTCTGGGGAGTGATGCTGCTGCACTGCTTTTTAATAGTAAAAATGAAGACCTGAATGCAGAAGATGTCTACAGTCGCCTGACAACACCTGTGTTTGGGAAGGGAGTTGCATACGATGTGCCTAATCCAGTTTTCTTGGAGCAGAAGAAAATGTTAAAAAGTGGCCTTAACATTGCCCACTTTAAACAGCATGTTTCTATAATTGAAAAAGAAACAAAGGAATACTTTCAGAGTTGGGGAGAAAGTGGAGAAAAAAATGTGTTTGAAGCTCTTTCTGAGCTCATAATTTTAACAGCTAGCCATTGTTTGCATGGAAAGGAAATCAGAAGTCAACTCAATGAAAAGGTGGCACAGCTGTATGCAGATTTGGATGGAGGTTTCAGCCATGCAGCCTGGCTGTTACCAGGTTGGCTGCCTTTGCCTAGTTTCAGACGCAGGGACAGAGCTCATCGGGAAATCAAGAATATTTTCTATAAGGCAATCCAGAAACGCAGACAGTCTCAAGAAAAAATTGATGACATTCTGCAAACTTTACTAGATGCTACATACAAGGATGGGCGTCCTTTGACTGACGATGAAGTAGCAGGGATGCTTATTGGACTACTCTTGGCAGGGCAGCATACATCCTCAACTACTAGTGCTTGGATGGGCTTCTTTTTGGCCAGAGACAAAACACTTCAAGAAAAATGTTATTTAGAACAGAAAACAGTCTGTGGAGAGAATCTGCCTCCTTTAACTTATGACCAGCTCAAGGATCTAAATTTACTTGATCGCTGTATAAAAGAAACATTAAGACTTAGACCTCCTATAATGATCATGATGAGAATGGCCAGAACTCCTCAGACCGTGGCAGGGTATACCATTCCTCCAGGACATCAGGTGTGTGTTTCTCCCACTGTCAATCAAAGACTTAAAGACTCATGGGTAGAACGCCTGGACTTTAATCCTGATCGCTACTTACAGGATAACCCAGCATCAGGGGAAAAGTTTGCCTATGTGCCATTTGGAGCTGGGCGTCATCGTTGTATTGGGGAAAATTTTGCCTATGTTCAAATTAAGACAATTTGGTCCACTATGCTTCGTTTATATGAATTTGATCTCATTGATGGATACTTTCCCACCGTGAATTATACAACTATGATTCACACCCCTGAAAACCCAGTTATTCGTTACAAACGAAGATCAAAATGAAAAGACTGCCAGGAGCTAATATATGTGATCGTCACTGTAAGCCACAAAGGCGTTCGAAGAGAATGAAGTGTACAAAACAA

Publications

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