Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FABP5P5
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr11:45770416-45771264  UCSC
Strand -
Parental Sequence XM_031013953.1
Parental seq. overlap 342 bp
Parental seq. overlap (%) 39.6%
Genomic Region Intergenic
Retrocopy Summary FABP5P5, located on chr11:45770416-45771264, is a retrocopy of the parental gene FABP5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FABP5
Full Name N/A
Also known as FABP5
Coordinate chr8:33295183-33299596
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FABP5P6
Bonobo Pan paniscus FABP5P6
Orangutan Pongo abelii FABP5P6
Gibbon Nomascus leucogenys FABP5P3
Green monkey Chlorocebus sabaeus FABP5P1
Crab-eating macaque Macaca fascicularis FABP5P6
Rhesus Macaca mulatta FABP5P7
Baboon Papio anubis FABP5P8
Human Homo sapiens Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FABP5P5
GCAAAAACCTCACCATAAAAACTGAGAGCACTTTGAAGACAACAGTTTTCTTCTTACACCCTGGTTAGAGAAGTtAGGAGAGGGATGGGAAGGAAAAACACTACAACAAGAAAAATCAGAAGATGGGAAATCAGTGGTGGACTGTGTCATGAACAATGTCACCTGTACTCAGATCTATATGAAAAAAAAAGTAGAATAAAAATTTCATCATCACTTTGGACAGGAATTAGCTATGAAAATAAACAAGCTCAGTTCAATGAGCAGAGCTCCATACTGCTGGGTTGTTTTTTTTTCTTTTTCATGACTGTGTTCAATTATCTTTATCACAAATATTTTACATGCAACTATTTCGAAGTGTTGATTTGGTTAGGTCATCCCTTTGGTTAATAAATG
>XM_031013953.1
TCGCGTACCCTGGCAAGAAGAGCTGGTTAGCACCTCCCGACCCCGAGAAGGCCcggggggcgcccggcgggcggggcggggaccgggcgaggcCCGCCTCCCATTGGCCGCATAGCGCCGCCCCGCCCGGGCCGCCGTTATAAAGCAGCCGCCGGCGCCGGGTGCCTCACAGCACGCTGCCACGCCGACGCAGACCCCTCTCTGCACGCCAGCCCGCCCGCACCCACCATGGCCACAGTTCAGCAGCTGGAAGGAAGATGGCGCCTGGTGGACAGCAAAGGCTTTGATGAATACATGAAGGAGCTAGGAGTGGGAATAGCTTTGCGAAAAATGGGCGCAATGGCCAAGCCAGATTGTATCATCACTTGTGATGGCAAAAACCTCACCATAAAAACTGAGAGCACTTTGAAAACAACACAGTTTTCTTGTACCCTGGGAGAGAAGTTTGAAGAAACCACAGCTGACGGCAGAAAAACTCAGACTGTCTGCAACTTTACAGATGGTGCATTGGTTCAGCATCAGGAGTGGGATGGGAAGGAAAGCACAATAACAAGAAAATTGAAAGATGGGAAATTAGTGGTGGAGTGTGTCATGAACAATGTCACCTGTACTCGGATCTATGAAAAAGTAGAATAAAAATTCCATCATCACTTTGGACAGGAGTTAACTAAGAGAATGACCAAGCTCAGTTCAATGAGCAAATCTCCATACTGTTTCTTTCTTTTTTTTTTTTCATTACTGTGTTCAATTATCTTTATCATAAACATTTTACATGCAGCTATTTCAAAGTGTGTTGGATTAATTAGGATCATCCCTTTGGTTAATAAATAAATGTGTTTGTGCTAATA

Publications

PMID - Link Title