Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FCF1P8
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chrX:80268897-80269266  UCSC
Strand +
Parental Sequence XM_019010256.2
Parental seq. overlap 308 bp
Parental seq. overlap (%) 12.7%
Genomic Region Intragenic (DACH2)
Retrocopy Summary FCF1P8, located on chrX:80268897-80269266, is a retrocopy of the parental gene FCF1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FCF1
Full Name N/A
Also known as FCF1
Coordinate chr14:55356181-55377889
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FCF1P9
Chimpanzee Pan troglodytes FCF1P9
Bonobo Pan paniscus FCF1P9
Orangutan Pongo abelii FCF1P10
Gibbon Nomascus leucogenys FCF1P11
Green monkey Chlorocebus sabaeus FCF1P11
Crab-eating macaque Macaca fascicularis FCF1P11
Rhesus Macaca mulatta FCF1P10
Golden snub-nosed monkey Rhinopithecus roxellana FCF1P9
Marmoset Callithrix jacchus FCF1P9
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FCF1P8
ATCTGTATACCAAGTGTATCCCTATATAAATGACTTTGTAATGGCTGAAATTGAAAAATTTAGGCAGAAATAGCTAGTTTCTCTAAGGATCACCAAGTATAGAAGATTTGAATAATTAGCATGCACACATTAAATCACTTATGCAGATGACTGCTTCATACGAGAGTAATTCAGCACAAGTTTACATTGTGCTCACAGTTGATCAGGACCTGAAATGAATCTGGAAGATCCCTGGAGCTCATATCATATACATTCCTAACTATAGATACAACGTTGAATGGATGACAGATAATTATGGAGCCCTTTGGGTCTAATTCTTACAAGGCAAAGTTCCTTTGACTTTTTTGATCAACTTTCTCTGTTGCCAGTT
>XM_019010256.2
GTAGAAGTATTGCGCCGTTGGTGATTACGGAAGAACCGGGAGTTTGGCGTGACTATGGGGAAGCAAAAGAAAACAAGGAAGTATGCGACCATGAAGCGAATGCTTAGTCTCAGAGATCAGAGGCTtaaagaaaaggatagattaaaacctaaaaagaaagaaaagaaGGATCCCAGCGCGTTAAAGGAAAGAGAAGTTCCCCAACACCCTTCCTGCTTATTTTTCCAATATAATACACAGCTGGGCCCACCTTACCACATCCTCGTTGATACCAACTTTATCAACTTTTCCATAAAAGCCAAACTGGACTTAGTGCAGTCAATGATGGACTGTCTGTATGCCAAGTGTATCCCATGTATAACCGATTGTGTAATGGCTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTAAGGATTGCCAAGGATCCAAGATTTGAACGATTACCATGTACACACAAAGGAACCTATGCAGATGACTGCTTAGTACAGAGAGTAACTCAGCATAAGTGTTACATTGTGGCCACAGTTGACCGGGACCTTAAAAGAAGAATCCGTAAGATTCCTGGAGTTCCTATCATGTACATTTCTAACCATAGATACAACATTGAACGGATGCCAGATGATTATGGAGCCCCTCGATTCTAATTCTTACAAGACACAGTTCCTCTGCCTTTCTTCGACCAACTTTCTCTTGTTGCCAGTTCATTACACGAAATGTAGCAggatttttaaggaatcagagagactgatggagttcaagaagatatttattatttaggtgcaccagcccagtcagattaacatccaaaggactgaaccctgaacaaagagttaagttaccttttaagcattttgtggggctgggggggttggggggaatctgtgcaggaggaagcatattacagaagcgagaaagacagttattcaattaactgagacatgcattacatcatttcttacttttcaaggaaaatcatgttttacgacttgagtttatctgtctagttaccttgcagctgcatagctagagaaacagggtatttacaatgcctgggaaaggaggagagataaggctcactagccacagaaaaacaggcagttaatttttaaaggactccagcgctttctctttctcatggggaattggattttcttacatgcaactgaatttctgcttacacattttttaatttcttttaattgcttttccaATGCAATAGCATGAATTATTATTCTGTTGACCTATTTGCCTTACTATGAGCTGAGGGTAGTTCAATATGCTCACtttttttttttttttcttgagatgaagttttgctctgtcaccaggctggagtgcagtggcgtgatctgggctcactgcaacccctgcctcccatccttcaagtgattctcctgcctcagcctcccgagtagctgggattacaagtacacgccaccatgctcaactaatttttcttttttgggcaggggggtgggtatttttagtagagacaaatacttttgtatttttaatacagaaaaatatgcctcggcctcccaaagtgctggaattacaggcgtgagccaccgtgcctggccTGCTCACTTTCTGATGCTGCTTTTTTGTTGtttgtttgtttatttgtttgttttgagacggagtctcgctctgtcaccaggctggagtgcagtggcgcgatctcggttcattgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctgcggagtagctgggactataggtgcgtgccaccacgtccagcCACTGATGCTGTTTTGCCACTGATGCTGTTTTGAAATTGATATTTTGTCTCATAAAAATTAggccaggcatggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttggagatgagcctggacaacatggcaaaaccccacctctactaaaaatacaaaaaaaattagctgggtatggtgtcacgtgcctgtagtcccagccactggggaggctgaggcaggagaacctcttgaacccaggaggtggaggttgcagtgagctgagattgcgccactgcattccagcctgggtgacagagtgagactgtctcaaaaaaaaaaaaaaaaaaaaaaaTTAatgatggtcaaagggtataaaatctcagacaggaagaatatgttttatgctttttttgagttctgttgtacagtgtggtgcctatacttaataatggggtattatacatttcaaaattgatgttctcatcacagaaatgtatttgaagtattgcatatgttaactaacttgatttaactattccatattgtatccacaatttatgatatcactttgtaacccatacatttatacaattataaattgtcgatttacaataaaaAA

Publications

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