Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MAP1LC3BP4
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr11:73800060-73800712  UCSC
Strand -
Parental Sequence NM_001283869.1
Parental seq. overlap 585 bp
Parental seq. overlap (%) 31.8%
Genomic Region Intergenic
Retrocopy Summary MAP1LC3BP4, located on chr11:73800060-73800712, is a retrocopy of the parental gene MAP1LC3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MAP1LC3B
Full Name N/A
Also known as -
Coordinate chr20:75759004-75771805
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MAP1LC3BP3
Chimpanzee Pan troglodytes MAP1LC3BP5
Bonobo Pan paniscus MAP1LC3BP5
Gorilla Gorilla gorilla MAP1LC3BP5
Orangutan Pongo abelii MAP1LC3BP6
Gibbon Nomascus leucogenys MAP1LC3BP5
Green monkey Chlorocebus sabaeus MAP1LC3BP2
Rhesus Macaca mulatta MAP1LC3BP5
Baboon Papio anubis MAP1LC3BP3
Golden snub-nosed monkey Rhinopithecus roxellana MAP1LC3BP5
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MAP1LC3BP4
CCAGACCCCAGCACCATGCGATCGGAGACCTTCGAGCAGCGCAGCACCTTCCAACGAAGGGTAGATGTCCGACTTATTCGAGTGCAGCATCCAACCAAAATCCCGGTGATAATAGAATGATACAAGGGTGAGAAGCAGCTTCCTGTCCTGAATAAAACGAGGTTCCTTGTACCTGACCACGTCAACGTGAGTGAGCTCATCAAGATAATTAGAAAGCGCTTATAGCTCAGTGCTACTCAAGCCTTCTTCCTGTTGATGAAGGGGGACACAGCATTGTGAGCGCCTCCACACCAATCTCAGAGGCCTATGAGAGTGAGAAGGATGAAGGTGGATTCCTGTACATGGTCTATGCCTCCCAGGAGACATTTGGGAAGAAATTATCGGTGTAAAACTAAGAAAATGCATCTATTGTAGAATTTTTTCAACTCTTCCTAAGGAAGGAAAAGGGATGTTACCAACTGAAATCGATCAGTTCATCTAATCAGAGATCTTCAAACAGTAGTGTTCCCACCTAGGAGTGTTAGGAAATTGCGTCTGTACTTCAGGCAGAAAAACTAAGCTCTAAGTGAGCACGTTCAGCTTCGGAAACTGTATTATTTAATGTAGGTTAGCTGTTTTCAAATTTTAAAAGTTTAAAAATAAAACTTTGCATg
>NM_001283869.1
ACAAGGGAAGTAGCTATCGCCAGAGTCAGATTCTccgccgcagccgccgccgcccccaggagccgccgggaccctcgcgtcgtcgccgccgccgccCAGATCCCCGCACCATGCCGTCGGAGAAGACTTTCAAGCAGCGCCGCACCTTCGAACAAAGAGTAGAAGATGTCCGACTTATTCGAGAGCAGCATCCAACCAAAATCCCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCCTGTCCTGGATAAAACAAAGTTCCTTGTACCTGACCATGTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGCGCTTACAGCTCAATGCTAATCAAGCCTTCTTCCTGTTGGTGAACGGCCACAGCATGGTCAGCGTCTCCACACCAATCTCAGAGGTGTATGAGAGTGAGAAGGATGAAGATGGATTCCTGTACATGGTCTATGCCTCCCAGGAGACGTTCGGGATGAAATTGTCAGTGTAAAACTAGAAAAATACATCTATTCTAGAATTTTTTAAACCCTTACCAAGGAAAAAAAAGGGATGTTACCAACTGAGATGGATCAGTTCATCTAATCACAGATCATCCAACAGTAGTGTTCCCACCTAGGAGTGTTAGGAAGTTGTGTTTGTGTTTCAAGCGGAAAACTGAGCTCCAAGTGAGCACGTTCAGCTTTGGAAACTATATTATTTAATGTAGGCTAGCTTGTTTTCAGATTTTAAAAATTTAAAAATAAAATACTTTGCATTCTTAAGTTGCCAATAAAATACACCTTCAAGTTATTTTAATGCTCTTTTCTCACTAATAGGAACTTGCAATTCCAGGAGTAATTTAAAGGCTTTCAGAGAGACCCTGAGTCTTCTCTTCAGGTTCACAGAACCCGCCGCCTTTTCGGGTAGAAGTTTTCTACTCAGCTAGAGAGATCTCCCTAAGAGGATCTTTAGGCCTGAGTTGTGAAGCGTAACCCCCGCAAAATGCATTTGCCATCAGAGTTGGCACAAATGCAGGGTAAATGAGGTGTGTGTAAGAAAACGGCCCTGACTGTAAACTGCTGGAGGTCCCCAGCTCCTAACAGAACTACACCCAAAGTCCACACGCTTGCAGGGGTAGACATTTCTGGTTTGTTCTCTAGATAGTTACACACATAAAGACACCACTCAAAAGGAAACTTGAATAATTTATAATTTTGATCTAGTTTCTTAAAAGACCCTGGAGAAAGAGTGGCATTTCTTCTGTTTCAGGTTTTGAGTTCAAACTGGTGCCCGTGTTGTTACGGAAAGCAGCAGAGTACCAGTGTCATTCTGGAAGACAGCGGTAGAAACCACAAAATGGTGTAACTGAAAGCATTAACATTCAGACACACTCGCTTCTGCCTTCTGGCTTAAAGCTATGGATGATTCACGTTGTTTTTTAATGTTAAATGTATAACTCAATATTACTGAAAAGGTTCCCACATTTTGAGTAGTAGTTGTCACTGTTAGGTCAGCCAGCCATCAGAATTCTCCCACACTAAGTGCATGTCAGTTGTGGAGAAAACATAGCAAAAAGAGCCATACGCTCTTTACAGATACTAATGTCAAGAGTTCAACCTCCTCAGGTTCAACCTGTGATAAAAGACCAGTGCTTCCCACTACCTGCATGGGGTTCACTTTTATAATTTTCTTGGGAGTATCACAGGAAAATCACAATTACACCACTTTAGACCCTATGTGTAGCAGGTCACAACTTACCCTTGTGTGTTTAGATGTATGGAATACCTGTATACATTAGTGAAAGCTGTTTACTGTAACGGGGAAAACCAGATTCCTTGCATCTGGGCCCTCTACCGAT

Publications

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