Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPDP1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr6:62965777-62966343  UCSC
Strand -
Parental Sequence XM_031010076.1
Parental seq. overlap 471 bp
Parental seq. overlap (%) 22.2%
Genomic Region Intragenic (EYS)
Retrocopy Summary HNRNPDP1, located on chr6:62965777-62966343, is a retrocopy of the parental gene HNRNPD. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPD
Full Name N/A
Also known as HNRNPD
Coordinate chr4:79824552-79845255
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HNRNPDP2
Orangutan Pongo abelii HNRNPDP1
Green monkey Chlorocebus sabaeus HNRNPDP1
Crab-eating macaque Macaca fascicularis HNRNPDP1
Rhesus Macaca mulatta HNRNPDP1
Baboon Papio anubis HNRNPDP1
Dog Canis familiaris HNRNPDP2
Panda Ailuropoda melanoleuca HNRNPDP1
Cat Felis catus HNRNPDP1
Greater horseshoe bat Rhinolophus ferrumequinum HNRNPDP1
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPDP1
AGTGAAGAAAATAATGGAAAATAAATACTACGATGATGGGCTTAATAAATGTGAAATAAAAGCAGCTGTATCAAAGGAACAGTATCAGCAACAATAGTGAGGGCCTAAAGGAGGATTTTCAGGAAGGTCTTGGGTAATAAGTGGTAACTAGCAGAATGGTTATGGGAAAGTATCCAGGCCAGGTGGTTATCCAAACAGCTGCAAACCATACAAAATAATTTCATTTACTTCTTATCCGCAACAACAGGTTGTAAGAAAGTACTTTCCAATTTGAAGAATCATTTGAGAGTGGCTCCTGTCACCTGTTAATAGCAGTTAAACTAAATCTTTTGTATCAATAAGCTAAATGGAGGCATGATGTTGGGTCCCTCTAATGTTAAGTTCTGAGTTTTCATTTTTAACAATTGCTTTCATTGTTATATTTTTAGTTGCTATGCTGCAAAATCAACTTGTCTTTTATGCCCCTCCTCCTAGTATGGCAGAGCAATTCTTATGTTAAAAGCCCGGTGTGACAGTGTCATTATGTAGTAGTGTTTAACAGTTTTTAGTAAATCCTTTTGTATAAAC
>XM_031010076.1
GCGGCCGTCCGGGTGGACAGAGCCAGGGGCACAGGGCTGACATCTCAGGGCTAATTCCCTCCTCCAGTGCGTAAATCCAGGCTTAAGCCGCCGCAGGGTGTGAGCCTCCCCTCCCCCACCCGAACGCCGCAGCTGCACGGGGCACGACAGCCTTCGCAGAGGTGCAGCCACACCCCGGCCTAACGCTGCTGCTCCCGCCGCTACTGGAGTGGTGGGGAGGGGTGAGTGGACTCCAGGAATCCTCGGAAGGGCGGGGGCGGAGGCAGGGGGCCCCTCTAGCCGCTACTTCGAAACAGCACTCCTTGTTCTCGATGGTCCCCGCGCGACTGTCTTAGCTCACGACACTTCCGGTTCCTTTTAAAGGCCCCCAAGGCTGTACAACGCGGAGCGTGAGAGGAAGGTATAAAGGGTAGCGAGAGGGCGGGACCGAGGAGGAAAGGGAAAAAAAAAACTAGGGGGATAGGGGTGGGGGGACGCGCGAAGGGCGCGCTCTCGCGTCACGTGACCGGGACGCGCCGTTCTTCCGTCGGCCATTTTAGGTGGTCCGCGGCGGCGCCATTAAAGCGAGGAGGAGGCAAGAGCGGCCGCCGCTGGTGCTTATTCTTTTTTAGTGCAGTGGGAGAGAGCGGGAGTGTGCGCCGCGCGAGAGTGGGAGGCGAAGGGGGCAGGCCAGGGAGAGGCGCAGGAGCCTTTGCAGCCACGCGCGCGCCTTCCCTGTCTTGTGTGCTTCGCGAGGTAGAGCGGGCGCGCGGCAGCGGCGGGGATTACTTTGCTGCTAGTTTCGGTTCGCGGCAGCGGCGGGTGTAGTCTCGGCGGCAGCGGCGGAGACACTAGCACTATGTCGGAGGAGCAGTTcggcggggacggggcggcggcagcggcaacggcggcggtaggcggctcggcgggcgagcaggagggagccatggtggcggcgacacagggggcagcggcggcggcgggaagcggagccgggaccgggggcggaaccgcgtctggaggcaccgaagggggcagcgcagagtcggagggggcgAAGATTGACGCCAGTAAGAACGAGGAGGATGAAGGCCATTCAAACTCCTCCCCACGACACTCTGAAGCAGCGACGGCACAGCGGGAAGAATGGAAAATGTTTATAGGAGGCCTTAGCTGGGACACTACAAAGAAAGATCTGAAGGACTACTTTTCCAAATTTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATCCTATCACAGGGCGATCAAGGGGTTTTGGCTTTGTGCTATTTAAAGAATCGGAGAGTGTAGATAAGGTCATGGATCAAAAAGAACATAAATTGAATGGGAAGGTGATTGATCCTAAAAGGGCCAAAGCCATGAAAACAAAAGAGCCGGTTAAAAAAATTTTTGTTGGTGGCCTTTCTCCAGATACACCTGAAGAGAAAATAAGGGAGTACTTTGGTGGTTTTGGTGAGGTGGAATCCATAGAGCTCCCCATGGACAACAAGACCAATAAGAGGCGTGGATTCTGCTTTATTACCTTTAAGGAAGAAGAACCAGTGAAGAAGATAATGGAAAAGAAATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGTAGCCATGTCGAAGGAACAATACCAGCAACAGCAACAGTGGGGATCTAGAGGAGGATTTGCAGGAAGAGCTCGTGGAAGAGGTGGTGACCAGCAGAGTGGTTATGGGAAGGTATCCAGGCGAGGTGGTCATCAAAATAGCTACAAACCATACTAAATTATTCCATTTGCAACTTATCCCCAACAGGTGGTGAAGCAGTATTTTCCAATTTGAAGATTCATTTGAAGGTGGCTCCTGCCGCCTGCTAATAGCAGTTCAAACTAAATTTTTTGTATCAAGTCCCTGAATGGAAGTATGACGTTGGGTCCCTCTGAAGTTTAATTCTGAGTTCTCATTAAAAGAAATTTGCTTTCATTGTTTTATTTCTTAATTGCTATGCTTCAGAATCAATTTGTGTTTTATGCCCTTTCCCCCAGTATTGTAGAGCAAGTCTTGTGTTAAAAGCCCAGTGTGACAGTGTCATGATGTAGTAGTGTCTTACTGGTTTTTTAATAAATCCTTTTGTATAAAAA

Publications

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