Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name IER3IP1P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr6:37406993-37407297  UCSC
Strand -
Parental Sequence XM_004059388.2
Parental seq. overlap 275 bp
Parental seq. overlap (%) 18.7%
Genomic Region Intragenic (TBC1D22B)
Retrocopy Summary IER3IP1P1, located on chr6:37406993-37407297, is a retrocopy of the parental gene IER3IP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name IER3IP1
Full Name N/A
Also known as IER3IP1
Coordinate chr18:40452715-40474045
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens IER3IP1P1
Chimpanzee Pan troglodytes IER3IP1P1
Bonobo Pan paniscus IER3IP1P1
Orangutan Pongo abelii IER3IP1P2
Gibbon Nomascus leucogenys IER3IP1P2
Green monkey Chlorocebus sabaeus IER3IP1P2
Crab-eating macaque Macaca fascicularis LOC101866362P1
Rhesus Macaca mulatta IER3IP1P1
Baboon Papio anubis IER3IP1P1
Golden snub-nosed monkey Rhinopithecus roxellana IER3IP1P1
Marmoset Callithrix jacchus IER3IP1P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>IER3IP1P1
GCTGGGGAAGAGACCAGGGAATTGATGGATTTGGAGAGGAGCCAGGAATTAAATCTCAGCTAATGAACCTTATTTGATCTGTAAGAACCTTGATAAGAGTGCCACTGATAATAGTAAACTCAACTGCAATTGTGTTTCTCTTATTATTTGGATGAATATCAGTGGAGGAAATGGAGACTCAGAAGACATGCCAGCAGAAGTTATTACTTCAGTAATTATTGGAAATCTTAGCTGGCTGACCTTGCACTTGACAAAAATGTAAAGCTTAAAATAAAACCAGACTTTCTATTTATCTGA
>XM_004059388.2
TTCCGTAGGAAGGCACCGGCCGTGGAGGCGCCACGTCCCTTGCGGCGGCGGGAGAGAAATCGCTTGGACTTCGGGGCGGCCTCGGACAGCCATGGCCTTTACCCTGTACTCACTGCTGCAGGCAGCCCTGCTCTGCGTCAACGCCATCGCAGTGCTGCACGAGGAGCGATTCCTCAAGAACATTGGCTGGGGAACAGACCAGGGAATTGGTGGATTTGGAGAAGAGCCGGGAATTAAATCACAGCTAATGAACCTTATTCGATCTGTAAGAACCGTGATGAGAGTGCCATTGATAATAGTAAACTCAATTGCAATTGTGTTACTTTTATTATTTGGATGAATATCAGTGGAGAAAATGGAGACTCAGAGGAGGACATGCCAGTAGAAGTTATTACTTCGGTCATTATTGGAATATTTATATCTTAGCTGGCTGACCTTGCACTTGTCAAAAATGTAAAGCTGAAAATAAAACCAGGGTTTCTATTTATCTGTTTTTTTTTTTAATGTTGCACTTGTAGTTTCATTACAAAAGATCATATCATGAAAGGCAGTAACTCTCCAGGACTGGAATATCTGATTGCTCAGTGTTAATAGTAGTTCATGCTGTGGTGAGATTGTTAAAAGGGTGCAAGACTGTTGCTTCTCTTTTTTTAGATATTTTTCTATCTCTCACTTCTCAGGGATGAAATTCTTTTTCAAAGTTTTGAAGTTCCTTGCAACTTAGCCATGATGTGAGTGGTTATCCCTAGATACAATTAAAAGGATTTTTAAAAAGTAATTACTGCACATAAAATGATAAATAGGTAATTTGAATAATTTTATGTTAAGCTCCTTGGTTAATTATTTTGTCTATTGTCTCAGCTATAAATTCAAATTTATACATACTATTGAGTATTAATATTCTCTGATTTCAGGGAGAATTGTCAGTCACATGATGATTATGTTTTTGTTTAACATTCTTTCCATGCACTTGTTATTTTATTAATTTGCCTGAATGATGAGACCAGACCAGTATCTACAGATTTTCATTGTCAGAAAAATCTATAAGTCTGCCCTTTTTACAATGATGATTTAAAAAAAACAACAGCGTAAATATTAGCCCACAAGAGCAGTCCTAAACAATCACAATTACACTGTACTACCCAAGAAGACTGTTTATTGTGAAGCATTTACCTTTCAAAAAATCATTACATTTCTATTTCTTGGTGGAGCAGCACATTGTGGAGTGTGATTCTTAATTCTTCATTGAGTTTGTCAATAGGACATTCATGCTGGATAGGTTGTCTGTTTCTATGTCTCAGACCATCTCGTGAGATTGTTTGCCCATCTCATAATAGTTTTATGCAGAAAGGTTGAAACTATGTAAATGGTTTTTATGGAAATTATCAGTTACAATATTTTAAAGGTGTAGAATGGCATCTTTGTTTATAGGAGAACATTTGTAAATAAAGTTAAATTTCTAAGTCAA

Publications

PMID - Link Title