Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101131106P1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr7:130992118-130992600  UCSC
Strand +
Parental Sequence XM_019016448.2
Parental seq. overlap 410 bp
Parental seq. overlap (%) 33.6%
Genomic Region Intergenic
Retrocopy Summary LOC101131106P1, located on chr7:130992118-130992600, is a retrocopy of the parental gene LOC101131106. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101131106
Full Name N/A
Also known as LOC101131106
Coordinate chr19:21649211-21655189
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UQCRFS1P2
Chimpanzee Pan troglodytes UQCRFS1P1
Bonobo Pan paniscus LOC100974890P1
Orangutan Pongo abelii LOC100459356P1
Gibbon Nomascus leucogenys LOC100605926P1
Green monkey Chlorocebus sabaeus LOC103234417P1
Baboon Papio anubis LOC101026782P1
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101131106P1
TAGGCCATGGTGCCTGCCACCCTGGAGCTGCCTGTGCTGTACAAGGAGCAGCCTTTGCTATGCCAGGAGTCACTGAGTGGCCAGGCCATGAGCCTGTCTTGGGTCAACTCTGTGGGCCTCAATGTCCCTGCTTCTGTTCGTTATTCCCATACAGACATCAATGTGCCTGACTTCCCTGATTACTGTTGCATTGAGATTTTTGATGGGACAAAGTCTTCAAAAGAGGATGGCGAGGCTAGGAAAGGGTTCTCCTATTTGGTAACTGCAACAACTGCTGTGGGTGTCACATATGCTGCCAAGAATGTCATCTCCCAGTTTGTTTCCAGCATCAGTGCTTCTGCTGATGAGTCGGCCATGTCGAAAATTGAAATCAAGTTATTTGATATTCCAGAAGGCAAGAACATGGCTTTCAAATGGAGAGGCAAATCCCTGTTTGTATGCCACAGAACCAAGAAGGAGATTGACCAAGAACCTGCAGTTGAA
>XM_019016448.2
AGAATTTCCTTTCCGGCGGCGCGCTGACGTCACGCGTCCCGCGCCTCCTCGCGCCTGCGCCGTGGTTGGAAGGTCGTCCCTGTGACCGGCTTGGCGGTTGGAGCGGCTGTCGCCATGTTGTCGGTCGCAGCCCGCTCGGGCCCGTTCGCGCCCGTCCTGTCGGCCACGTCCCGCGGGGTGGCGGGCGCGCTGCGGCCCTTGGTGCAGGCCACGGTGCCCGCCACCCCGGAGCAGCCTGTGTTGGACCTGAAGCGGCCCTTCCTCAGCCGGGAGTCGCTGAGCGGCCAGGCCGTGCGCCGGCCTTTGGTCGCCTCCGTGGGCCTCAATGTCCCTGCTTCTGTTTGTTATTCCCACACAGACATCAAGGTGCCTGACTTCTCTGAATACCGCCGCCTTGAAGTTTTAGATAGTACGAAGTCTTCAAGAGAAAGCAGCGAGGCTAGGAAAGGTTTCTCCTATTTGGTAACTGGAGTAACTACTGTGGGTGTCGCATATGCTGCCAAGAATGCCGTCACCCAGTTCGTTTCCAGCATGAGTGCTTCTGCTGATGTGTTGGCCCTGGCGAAAATCGAAATCAAGTTATCCGATATTCCAGAAGGCAAGAACATGGCTTTCAAATGGAGAGGCAAACCCCTGTTTGTGCGTCATAGAACCCAGAAGGAAATTGAGCAGGAAGCTGCAGTTGAATTATCACAGTTGAGGGACCCACAGCATGATCTAGATCGAGTAAAGAAACCTGAATGGGTTATCCTGATAGGTGTTTGCACTCATCTTGGCTGTGTACCCATTGCAAATGCAGGAGATTTTGGTGGTTATTACTGCCCTTGCCATGGGTCACACTATGATGCATCTGGCAGGATCAGATTGGGTCCTGCTCCTCTCAACCTTGAAGTCCCCACGTATGAGTTCACCAGTGACGATATGGTGATTGTTGGTTAAGAGACTTGGACTCAAGTCATAGGCTTCTTTCAGTCTTTATGTCACCTCAGGAGACTTATTTGAGAGGAAGCCTTCTGTACTTGAAGTTGATTTGAAATATGTAAGAATTGATGATGTATTTGCAAACATTAATGTGAAATAAATTGAATTTAATGTTGAATACTTTCAGGCATTCACTTAATAAAGACACTGTTAAGCATTGTTATGCTCAGTCATACACGCGAAAGGTACAATGTCTTTTAGCTAATTCTAATTAAAAATTACAGACTGGTGTACAAGA

Publications

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