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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101132116P15
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr6:73947206-73947546  UCSC
Strand +
Parental Sequence XM_031003324.1
Parental seq. overlap 290 bp
Parental seq. overlap (%) 36.1%
Genomic Region Intergenic
Retrocopy Summary LOC101132116P15, located on chr6:73947206-73947546, is a retrocopy of the parental gene LOC101132116. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101132116
Full Name N/A
Also known as LOC101132116
Coordinate chr1:204236454-204240586
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens H3P27
Chimpanzee Pan troglodytes HIST1H3AP19
Bonobo Pan paniscus LOC100970414P12
Orangutan Pongo abelii LOC100433071P15
Gibbon Nomascus leucogenys LOC100599068P7
Green monkey Chlorocebus sabaeus LOC103232061P10
Crab-eating macaque Macaca fascicularis H3F3AP18
Rhesus Macaca mulatta LOC699443P11
Baboon Papio anubis LOC101010649P17
Golden snub-nosed monkey Rhinopithecus roxellana LOC104677083P7
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101132116P15
TGCCTCTAGCTCGCAGAGCTCCAGCCAAAGGAGAAGTGGGGTAAGTAAGAAGGTACCATAGCTCATACAAAGCAAACTGCCTGCAAATCGACCAGTGACAACGCACCCAGAAAGCAAATGGCTAAAAAAGCCACTCGAGAGGGAGTGCACCCTGTACTTAAAGGGTGAAGAAACCTCATCATTATAGGCCTGGTACTGTGGCACTCCTTGAAATTAGACATTAACAGAAGTCCCTTGAACTTATGATTTGCCAAATTCCCTTCCATCATCAGCATGAGAACTAGCTCAGAACTTTAAAACAGATCTGCACTTCCAGAGCACAGCTATTGGTGTTTTGCAGG
>XM_031003324.1
CGCAACACAGCCATCTTGCGTCGGGGGCCCGGGCCCGGAAGGAGAGCGAGCCCCGTCCCCTGATCCCGGAGGCCGATACCGGCGAGGGGCTGCCCTGCACGCAGGCGGCCGGCCCAGGAGTCTTAGCGGATCAAGTTGTCTACGGCGGACTCGGGCCGGTCCCGCAGGACCCGGCCGCACTTGGCCGAGGGCGCAGGCGGGAAGGAGGCCGTCGGTCCGCCCCTCCCGCTGCCGCAGCGGCCAGccgccgccgcgccgccgtcgctctccaacgccagcgccgcctctcgctcgccgAGCTCCAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTACCATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCGCTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATCTGCGCTTCCAGAGCGCAGCTATCGGTGCTTTGCAGGTAAAATGGTGGGTGGGAAGACTCAGAGTTTGTATTcctgttgtgtaccaagaacagttccaaattgttacatatgcttatatcatttaatcacaagcctgtcaggtagttgatattgttacttcactgttgagacttcagaaaggttaaattgctcaaggtcatacacatag

Publications

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