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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101135216P25
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr12:21114344-21114601  UCSC
Strand +
Parental Sequence XM_004064516.2
Parental seq. overlap 232 bp
Parental seq. overlap (%) 44.3%
Genomic Region Intragenic (SRGAP1)
Retrocopy Summary LOC101135216P25, located on chr12:21114344-21114601, is a retrocopy of the parental gene LOC101135216. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101135216
Full Name N/A
Also known as LOC101135216
Coordinate chrX:95165939-95170827
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL36AP41
Chimpanzee Pan troglodytes RPL36AP30
Bonobo Pan paniscus LOC100993427P25
Orangutan Pongo abelii RPL36ALP2
Green monkey Chlorocebus sabaeus RPL36AP14
Crab-eating macaque Macaca fascicularis RPL36ALP3
Rhesus Macaca mulatta RPL36ALP3
Baboon Papio anubis RPL36ALP4
Golden snub-nosed monkey Rhinopithecus roxellana LOC104659583P26
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101135216P25
GAAGTGACACAGTATAAGAAGGGCAAGGATTCATTGTATGCCCAGGGAAAGAGGTGCTACGATCAGAAGCAGAGTGGCTATGGTGGGCAGACAAAGCCAATTTTCTGGAAGAAGGCTAAGACCACAAAGAAGATTGTGCTAAGGCTGGAATGTGTTGAGCCTAACTGCAGATCCAAGAGGATGCTGGCCATTAACAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGACCAAGTGATCCAGTTCTAA
>XM_004064516.2
GAGTCCTCTCAGCCGCCCGAGGGCGCTGCGCTGAGCCTTACACTCTATGATTGCTCCTACCGACTCCCATGAGGAAGTGCGATCGGGAACCTCCTATATACTTCCGTTTGCCGCGCGGTTTCTTTCTTTCCGTGCCGATAGCGCTCACGCAAGCATGGTTAACGTTCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCATAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTACGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGCTTGAGTGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGTGTCATCTTTTATTATGAAGACAATAAAATCTTGAGTTTATGTTCAC

Publications

PMID - Link Title