Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101135431P10
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr7:113607451-113608929  UCSC
Strand +
Parental Sequence XM_019031021.2
Parental seq. overlap 1103 bp
Parental seq. overlap (%) 79.2%
Genomic Region Intergenic
Retrocopy Summary LOC101135431P10, located on chr7:113607451-113608929, is a retrocopy of the parental gene LOC101135431. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101135431
Full Name N/A
Also known as LOC101135431
Coordinate chr7:25749747-25752280
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CYCSP19
Chimpanzee Pan troglodytes CYCSP12
Bonobo Pan paniscus LOC100986481P9
Orangutan Pongo abelii CYCSP12
Gibbon Nomascus leucogenys LOC100580069P15
Rhesus Macaca mulatta CYCSP10
Baboon Papio anubis LOC100997529P7
Golden snub-nosed monkey Rhinopithecus roxellana LOC104672188P10
Marmoset Callithrix jacchus LOC100401718P5
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101135431P10
CAAAAGAGAGGATTAAATGTGGATGATGTTGAGAAAGGCAAGAAGATTTGTATTCAGAAGTGTGCCCAGTGCCACACTGTGGAAAAGGCAGGCAAGCACAGGACTGGGCCTAATCTCCATGGTCTCTTCGGATGGAAGACAGGTCAAGCCGTTGGATTATTTTACACAGATGCCAATAAGAACAAAGGCATCACCTGGGGAGAGGATACACTGATGGAGTATTTGGAGAATCCCAAGAAGCACATCTCTGGAACAAAGTGATCTTTGCCAGCATTAAGAAGAAGGCAGAAAGAGCAGACTTGATAGCTTATCTCAAAAAAGCTACTAATGAATAATAATTAGCCACTGCCTTATTTATTACAAAACAGAAATGTCTTATGACTTTTTTATGTGTACCATAATTTAATAGATCTCACACACCAGAATTCAGATCATGAATAACTGACAGAATATTTTGTTGGGCAGTCCTGATGTAAAACTAAGACTGGCTTGCAGTTAAATGAATATGTTCAGTTTTTTTGAATTTTAATAGTAATCCAAGTCAGTAAATGCTATCACTGTTTACCCTTTCTAAAGACATGATTTAATTAGACTTCGTTAGTAATGTTCAACTTTTCACAAAGATGGTGAATGCCATCTTAAAACATATTGGAGATTGGTTTTATATTTAGATTTATATAACTGGTTATGTGAATATATTTAAATACTGGAGAAATTCTTTCACTATCTCAGAACCAAGCAAGATTCACCTGTGTTTTGTGTTCATTTGCCTCTTAAAGGCAAGGGTTGAAGATAAGATAGCAATGTCTACTTTATATTTTTGGCCTTAACTATGTCAATGTAATTAGAATTCCCTGTATTTAAAATAGTTCCTTTTATTTATTGAAAGGCATTTTAGTGTGGTGTATGTGCAATATCAAATAAAGATTATTTAACACTTCTCACATTTTATAGATGATCTGTAAGATAATATGCTTTTAAAATAGTAGCAAGTTAAACTTCACTCTTGAATTATTTACAATCTAAGTCAAACTAAGTTATAATTTAGGATTGTCTTTAAACAGCCATTCAaGCCATTCAGAAACAGAAAATCGTAGAACTGCTGTGTATTTGTGATTGGGAATGGTGCTTTTGCCAACTTAAAATTATTAAAGTAGAGGAGATATACACAAATTTTAAAATTACGTGTGATCATAAGGCTTAAAAACAAAACCACAGATCATGA
>XM_019031021.2
CGCCAGCTCGGCCGCACGTCAGGGCGCGGGAGCGCGGAGCGAGTTTGGTTGCGCTTTCACCGGTACTTAAGCGCGGACCGGCGTGTCCTTGGACTTAGAGAGTGGGGACGTCCGGCTTGGGAGCGGGAATCTTCGTTGTGCCAGCGACTAAAAAGAGAATTAAATATGGGTGATGTTGAGAAAGGCAAGAAGATTTTTATTATGAAGTGTTCCCAGTGCCACACCGTTGAAAAGGGAGGCAAGCACAAGACTGGGCCAAATCTCCATGGTCTCTTCGGGCGGAAGACAGGTCAGGCCCCTGGATACTCTTACACAGCCGCCAATAAGAACAAAGGCATCATCTGGGGAGAGGATACACTGATGGAGTATTTGGAGAATCCCAAGAAGTACATCCCTGGAACAAAAATGATCTTTGTCGGCATTAAGAAGAAGGAAGAAAGGGCAGACTTAATAGCTTATCTCAAAAAAGCTACTAATGAGTAATAGTTGGCCACTGCCTTATTTATTACAAAACAGAAATGTCTCATGACTTTTTTATGTGTACCATCCTTTAATAGATCTCATACACCAGAATTCAGATCATGAATGACTGACAGAATATTTTGTTGGGCAGTCCTGATTTAAAACTAAGACTGGCTTGTGGTTAAATGAATATGTTCAGTTTTTGAATTTTAATAGTAACTCCAATTCAGTAAATGCTATCACTGTTTACCCCTTTTAAAGATATGATTAGACTTCATTAGTAATGTTCAACTTTTCACAAAGATGGTGAGTGCCATCTTAAAACTTACTGGAGATTGGTTTTATATTTAGATTTATATAACTGGTTATGTGAATATGTTTAAATACTGGGGAAATTCCTTCACTGTTTTAGAACCAAGCAAGATTCACCTGTGTTTTGTGTTCATGTTCATTTGCCTCTTAAAGGCAAGGGTTGAAGATAAATAAGGTAGCAATGTCTATAGTTTTGGCCTTAACTATGCCAATCTAATTATAATTCCCTGTATTTAAAATGGTTCCTTTTACTTATTGAAAGGCATTTTAGTGTGGTTTATGTGTAATATTAAAGATTATTCAACACCTCACATCTTACAGATCTATAAGGTCACATGCTTTTAAAATAGTAGCAAGTTAAACTTCACTCTTGAATTCTTTACAATCTAAGTCAAACTAAGTTATAATTTAGGATTGTCTTTAAACAGCCATTCAGAAACAAAACTGTAGAACTGTATTTGTGATTGGGAATGGTGCTTTTGCCAACTTAAAAGGATTAAAGTAACGGAGATATACACAAATTTTAAAATTATGTGTGATCACAAGACTAAAGATAATTAAAAAGAAAACCACAGATCATGA

Publications

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